GgaINT0119194 @ galGal4
Intron Retention
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86898623-86899447:-
Coord C1 exon
chr1:86899271-86899447
Coord A exon
chr1:86898769-86899270
Coord C2 exon
chr1:86898623-86898768
Length
502 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
GAGTGACTTTGTACCTAAAGCTT
3' ss Score
2.78
Exon sequences
Seq C1 exon
GTGAAAAATCTGACAGAAGAAATGGCGACTCTTGATGAGAACATCAGCAAACTTACTAAGGAGAAGAAGTCCTTGCAGGAAGCTCATCAGCAAGTTCTAGATGACCTTCAAGCAGAGGAAGACAAGGTCAACACACTGAGCAAAGCTAAAGTGAAACTGGAACAGCAAGTGGATGAT
Seq A exon
GTAAGCTGGCTTGGCCTTCATTTTTCTGCATGCTTGTTTGTCCAACACTAACAGTTTTCATGAGCCTGAAATGTCACAAAGCTTTGTCCTCTCAGAATCAATCACGTATTTATAAATGTAGCTCTTGTTGAATTGTCTGTAAAAAGTAAAATGACAGCAACAACGTGAATCTTATCTGCATGCTCAAGCCTCCGAAAGAAATGTAATGAAAAAGAGAAAATCTACTAAGTTTGCATTTGCAGTGTAACTTGACTTGCAAACAGAACTTTGCTACAAAGAGAACTGCAGTGCTTACTCAAACATAAAGCATGGACTAATCCTTATATTTCTTTAGCACATATGTCCATTGGCTGCCAGAAAACAAGAAACAAGATCGTATGCCTATGCTTATGTACTTCTTCAACACTTGCTAGAGCTCAGCATGAAGATGGATTTAGTATGCAACTGACTGTTGTAAACAACCTGTGTTGAATATATTTAATGAGTGACTTTGTACCTAAAG
Seq C2 exon
CTTGAGGGCTCGCTTGAGCAAGAGAAGAAAGTGAGGATGGATCTAGAAAGAGCAAAACGCAAACTGGAAGGAGATTTGAAGCTGACCCAAGAGAGTGTCATGGACTTGGAGAATGATAAGTTGCAAATGGAAGAAAAGCTGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=NA C2=0.694
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.6=100),PF0157614=Myosin_tail_1=FE(54.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(31.8=69.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAATCTGACAGAAGAAATGGCG
R:
TCAGCTTTTCTTCCATTTGCAACT
Band lengths:
318-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]