HsaINT0107642 @ hg19

Intron Retention

Gene

ENSG00000144821 | MYH15

Description

myosin, heavy chain 15 [Source:HGNC Symbol;Acc:31073]

Coordinates

chr3:108156401-108158760:-

Coord C1 exon

chr3:108158584-108158760

Coord A exon

chr3:108156547-108158583

Coord C2 exon

chr3:108156401-108156546

Length

2037 bp

Sequences

Splice sites

5' ss Seq

GAGGTCAGT

5' ss Score

7.7

3' ss Seq

ATAATGTTTCCTTTTGTCAGCTT

3' ss Score

6.16

Exon sequences

Seq C1 exon

GTCAAGAACTTGACTGAGGAAGTAGAGTTTCTAAATGAGGATATCAGCAAACTTAACAGAGCAGCCAAGGTTGTGCAGGAGGCCCATCAGCAGACCCTGGATGACCTGCACATGGAGGAGGAGAAGCTCAGCAGCCTGAGCAAAGCAAATCTGAAGCTGGAACAGCAAGTTGATGAG

Seq A exon

GTCAGTAACGGTGTATCTGGTTAGTTATCTATCTGTCTACATATACACATAACTCCAGTTTTTACTTCATTAATTTATCTTGACAGTTTCAGAAAAACCTAGTAGCATAGTTTGTTTTCCTGATTATTGAGAATAAAAGGGTTCTTTTTCTTATACACAAAACCACGATAGTATAAGAGAGGTCTCTGCATATAATCTGTCGGTTTTTAAATGCAATTTTCATTCAACCCTGGGCAATGGAAAAAGAACATTAAGATGAATGGTAAAGGGTTATCACTCTAGGTGACTGGCTTTTCCCCATATCTCCCACAGAACCTGGTATTTTGCCCCACAGATATGCTGGTACTCTATTTACCACTAGTGTTGAAGGATTAGTTTTAAAGGCCATGTGTGTTTCCAGTGGTGTGCTGAGATTTATTTATGGTTGAAAGATATGTGAGCCACAAGTTGTGTTCTACCTACACTATTGGAAAATACTTTTAAGATTCTAGAGATGATGCCCCTATTTTGCCTCTAAATGCCCTGTGAAATAAAGCTGTTTCACACCAGTTTCAATGTGTGGGTTCATAATTCTTCCTTTTTCCCACCCCAGCTGACATAGTGTATGCATTTATGCTCACAGTAGTCCCCAAAGTGTAGCCTTTATAAAATTGTTGACAAGAGTGGTTAGGTTTTTTTTTTTTCTTCTTATCTGCTGCTCTTTCTTCCTGCCTCTATATAAATTTCTTCTATTATCTATTCGTTGTGTTACATTTGTTCCTATTTCCAATAATAACATATCTCACAAAGCCTCAGCATAAGGATTTTTGGGTGTTTATATGTGTGCTTATATATGCACATCACACACACCTACCCACACCCACACACCCACCCACACACTTATTCTCTCCTGGTGTCTTAGTCCATTCAGGCTGCTATAATAAAATACCATAAACTGGGTGGCAAATAAATAGCAGTTTATTTCCTACAGTTCTGGAGGCTGGGAAGTCCATGATCAAAGTACCAGCAGAGTTGGTGTCTAGTGAGAACTCATTTCCTGGTTTATGGAGGGTGACTTCTCCCTGTGTCCTCACATCACACAAGGAACAAGGGAGCTCTCCAGGATCTCTTTTATAAGGACTAATTCCATTCATGGGGGCTCTACCTTCATGACCTCATCACTTCCTAAAGGGCCCACCTCCCAACACCATCATACTGGGAATTAGGATTTCAGCGTATGAATTTGGAATCCTTTCCAGAATTTCTCCCTCCTTCCCAATTTGAATTTCATCTCTTTGGCTGGTTACAGAGGATATCTTCCATTGTTTTAAAGTAAACATATCAATAAATAAAAAGCCATATTGTGACTGTTATCTAGCTTCCTGGAAAATTAACCTCTATATAATTCCTGGCAATACTAATCCATACAAAACTGGAATGTTCTGATGGGGAACATTTAGTGAGGAACCAGAATATGACATAATGTTATGAACTGGAAGAGGGTACCAAGGTGGTGACGGGGCTTGGAAATCATGACATGTGAGAATGTGTTTGAATGGGCCAGTGATGCCAGGGGGTTCTTGCAAATTATTAAGGATGATCATGCGGAAACTGATTTGCTTGGTGTTGCTCCAGGGAGCAGAGCTTGTACTTGTGGATAGAATTTACAGGGAATATTTTGGCTTCTTATGAAGAAGCACTCCCAAGTAAATGGACTTATCCACCCGTGAAATGAGCCGCCATGTGAAGAAGTGAGCTTCCTATCATTGGAAAACGATCAATCAAGGGCTCACTGGCCATTTCTTGTTGGTTCCTTCCCTAAGACAGAACTCATATTCTGTTATTTCTAGTTTTCTTCCATCCCTGTGATTTCTGGATTCTTTTGTTAACCTATTGACATATGCAATATTTATTTGGAAATATCTATGTTACTGGGCATCATTTATAGAATTTGTGCTTGTGTCTTTCTTTTTCCAGAAGGTAAGTGGTTAATGAACACATCTAGTGAAGTATAAACTCTACCTATTTATTTAGCTAAATAATGTTTCCTTTTGTCAG

Seq C2 exon

CTTGAGGGTGCCCTTGAGCAGGAGAGAAAAGCGAGAATGAACTGTGAAAGGGAACTGCACAAACTGGAGGGCAATTTAAAGCTGAATCGGGAAAGTATGGAGAACCTGGAAAGCAGCCAGCGACACCTGGCAGAAGAGCTGAGGAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000144821-MYH15:NM_014981:25

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.508 A=NA C2=0.980

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=FE(25.3=100),PF131661=AAA_13=FE(24.0=100),PF045827=Reo_sigmaC=PU(23.9=54.2),PF087025=Fib_alpha=PU(15.7=30.5)

A:

NA

C2:

PF0157614=Myosin_tail_1=PD(15.3=71.4),PF131661=AAA_13=FE(19.8=100),PF045827=Reo_sigmaC=FE(35.8=100),PF087025=Fib_alpha=FE(41.7=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000273353