BtaINT0097371 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64907364-64908774:+
Coord C1 exon
chr13:64907364-64907753
Coord A exon
chr13:64907754-64908647
Coord C2 exon
chr13:64908648-64908774
Length
894 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTCG
5' ss Score
2.88
3' ss Seq
TCCCTGACCCCGGCTCCCAGGCC
3' ss Score
6.78
Exon sequences
Seq C1 exon
GCTCGGGCCGAGGAGCTGGAAGAGGAGCTGGAGGCTGAGCGGGCGGCCCGGGCCCGCGTGGAGAAGCAGCGGGCAGAGGCGGCCCGGGAGCTGGAGGAGCTGAGCGAGCGGCTGGAGGAGGCCGGCGGTGCGTCAGCCGGGCAGCGCGAGGGCTGCCGGAAGCGCGAAGCCGAGCTGGGCCGGCTGCGGCGGGAACTGGAGGAGGCGGCTCTGCGGCACGAGGCCACGGTGGCGGCCCTGCGGCGTAAGCAGGCGGACAGTGCGGCCGAGCTGGGCGAGCAGGTGGACAGCCTGCAGCGTGTGCGGCAGAAGCTGGAAAAGGAGAAGAGCGAGCTCCGCATGGAGGTGGACGATCTGAGCGCCAACGTGGAGACCCTGGCCCGCGGCAAG
Seq A exon
GTGTCGGCCTCCTTCCTGACCCCGACCTCTGACCTGCCGCTTAGCAGCCCACCCTCACCGAACCCCTCCTGACTGCAGCAGCTGACCCCACGCTCTGAGCCCTGAGCACCCCCTGCCTATCTGACACCACACTAGTGCTGACCCTGCACCTGATCCTGATCCCTGGCCCCTTCACCCGGCACCCAGCCCGAAACCTCCCCCACTAGTTCTGACCTCAAACCCTACCTCCTAAACTCTGTGCCCTGATGCCAAAGGATTTTGACCCAGCATCCAATTCCAACTTCTCAGTCTTTAACCTCTGAATTCTGACCTCATCCCTATCCTGTTTGGGCTTCCCTGGTGGCTCAGATGGTAAATAATCTGCCTGTAATGCAGGAGACATGGGTTTGATCCCTGGGTGGGGAAGATGCCCTGGAGAAGGGAATGGCAACCCAGTCCAGTATTCTTGCCTGAACAATTCCATGGACAGAGGAGCCTGGTTGTCTACAGTCCATAGGGTCGCAAAGAATCGGACATGACTGCGCAAATAACACATACCTGACTGTTCTTGTCCTGAATCCCAGCACCCAACCCTGACCCCTGACCTTTGTACCACCTAATCTTAACAGCTGACCTGTGACCACTGTCCCCAGCTGACTTCAGACTCTGGTATCCTTACCTCACCTTGACCCACTGGCCTTAGGACAGGTTCAGCCAGCTCACTTCTGACACCCATGTTTTAAGCCATAGTCCAGCACTTGAATCTCTGACCCTGAACTTGGGGTTCTGTTCTCCCTTTGATTCCTGGGCACATGTCTAGCCTTCCAATTCCTGGCTCCAGTCTCTCTGATTGGCAGCCCTAGATCCTGCTTTGTGGGTCTCTGACTTGTTCTGATCCCTGACCCCGGCTCCCAG
Seq C2 exon
GCCAGTGCAGAGAAGCTGTGCCGGGCATATGAGGATCAGCTGAGTGAGGCCAAGATCAAGGTGGAGGAGCTACAGCGGCAGCTGGCAGACGCGAGCACCCAGCGTGGGCGGCTGCAAACCGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.546 A=NA C2=0.326
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100),PF0003816=Filament=PU(11.7=24.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGGAGCTGAGCGAG
R:
TCTTGGCCTCACTCAGCTGAT
Band lengths:
356-1250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development