GgaINT0010719 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2947443-2948368:-
Coord C1 exon
chr20:2947979-2948368
Coord A exon
chr20:2947570-2947978
Coord C2 exon
chr20:2947443-2947569
Length
409 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GCTTTACTTGTTGTATGCAGGCC
3' ss Score
6.92
Exon sequences
Seq C1 exon
GCTCGTATTGAGGAGCTGGAGGAGGAGCTGGAGGCTGAGCGTGCCGCTCGAGCCAAGGTGGAGAAGCAGCGGGCAGAAGTGTCCCGGGAGCTGGAGGAGCTGAGCGAGCGGCTGGAGGAGGCTGGAGGAGCGACGTCTGCACAGCTGGAGATGAACAAGAAGCGGGAGGTGGAATTCCTGAAGCTGAGGAGGGACCTGGAGGAGGCGACGCTGCAGCACGAGTCCACGGCGGCCGCTCTGCGGAAGAAACACGCGGACAGCGTGGCTGAGCTGAGCGAGCAGATCGACAACCTGCAGCGTGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGATGAAGATGGAGGTGGACGACCTGTCATCCAACATCGAATACCTCACCAAGAACAAG
Seq A exon
GTGGGTGCTCTGCACTCGGCAGCTTCATCTCCTGTGTGAGTAGGCAGCTGTGACTCTCTGTCATCGGTGCGGCTCACTGCACTGCATTCTGCACAGCCCTGTCCATGCACACTTATTCACCATGTGTAGCCTGTCCCTTTGTCACTCCGGCAGCACCTGCAGGATGCTTTGCTTGTCCTAGTCAAATCTGGAGGATCTGGGAGGACAGTGCTTGTGTGAATGACTTCAGAATGCTACAGTTAGCTTAGCAGAGATGTGAGAGCTCTGCCAGGCTCCTCCTACCTGCACAGTGTGCACCAGGGATTTGCTGAGCAGGGCAGTGAGGTCCAATGCAGTCACTGAGCACCTCCTGGGAGGGTGCTCTTTGGGCAGAGCCTTGTCTCATGTAGGCTTTACTTGTTGTATGCAG
Seq C2 exon
GCCAATGCTGAGAAGCTGTGCCGCACCTATGAGGACCAACTGAGCGAAGCCAAGTCCAAGGTGGATGAGCTGCAGCGGCAGCTGACTGATGTGAGCACACAGCGGGGCAGGCTGCAGACTGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=NA C2=0.674
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100),PF041569=IncA=PU(53.7=50.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF041569=IncA=FE(34.1=100),PF0003816=Filament=PU(12.5=65.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGAAGCTGAGGAGGGAC
R:
CATTCTCAGTCTGCAGCCTGC
Band lengths:
343-752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]