MmuINT0103625 @ mm9
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155455027-155456120:+
Coord C1 exon
chr2:155455027-155455416
Coord A exon
chr2:155455417-155455993
Coord C2 exon
chr2:155455994-155456120
Length
577 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
3' ss Seq
TCTCTGACTCTGGGTTCCAGGCC
3' ss Score
7.33
Exon sequences
Seq C1 exon
GCTAGGGCCGAGGAGCTGGAGGAGGAGCTGGAGGCGGAGCGAGCAGCCCGCGCCCGCGTGGAAAAGCAGCGAGCCGAGGCAGCGCGGGAGCTGGAGGAGCTGAGCGAGAGGCTGGAGGAGGCTGGCGGAGCTTCCGCGGGGCAGCGTGAGGGTTGCCGCAAGCGTGAGGCTGAGTTGGGCCGGCTGCGGCGGGAGCTGGAGGAGGCAGTTCTGAGGCACGAGGCCACTGTGGCTGCCCTGCGCCGCAAGCAGGCCGATAGCGCTGCAGAGCTGAGCGAGCAGGTGGACAGCCTGCAGCGCATCCGGCAGAAACTGGAAAAGGAGAAGAGCGAGCTGCGCATGGAGGTGGACGATCTGGGCGCCAGCGTGGAAACTCTGGCCCGTGGCAAG
Seq A exon
GTCTGCCTCCTTCCCGCCTCGAAATCAGTTTTGACTCTACACTGACCCTATCCCCCCCCGACCCCCCTTCCCCAATGCTCTGGTCACTTCATGACAATACTCCGCCGCAATGACCTCCTGACCCCTGGATGTTTAACCTGATGTCTAACCCCCAGCTCCGCAGCAGTCCTGACCTCTAACCCCGAGTGCTCACTTTCATTCCTTGGCTTGGGTTGCTCTGGTTCCCACCCAAACCTCAGCCCTTCCAACAGGAGTGTGACCCCAGCTCTTGACTCCTGAATTCAGACTTAGCACCTGCCCTAACACTCTTCTTGTCCCAATTTTGGACGCCCCCACCCCCACCCCAAAATCCTGACACCTGTTCCCAGATCTAGTTCCTAATACTGACTCACTGACCCTGGGATGGGTCCCGAGACTCCCAATTTGTGCCCACAGTAGGAACCCAGACCCTGAACCTGGAACTCGAGTCTGGTCTCATACCTAGTGTTCTAGGTCCCAGTCCCAGTCTCTTGCCTGGCAGCCCCTGGATCCCCCTTGGATGCACAAACTTGTCTCGATCTCTGACTCTGGGTTCCAG
Seq C2 exon
GCCAGTGCGGAAAAGCTGTGTCGGACCTATGAGGACCAGCTGAGCGAGGCCAAAATCAAAGTGGAGGAGCTGCAGCGACAGCTGGCCGACGCCAGCACCCAGCGGGGGCGGTTACAAACGGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-Myh7b:NM_001085378:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.492 A=NA C2=0.372
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(11.6=60.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGAGCTGAGCGAGAG
R:
GCTCAGCTGGTCCTCATAGGT
Band lengths:
345-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: