RnoINT0096568 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151145518-151146597:+
Coord C1 exon
chr3:151145518-151145907
Coord A exon
chr3:151145908-151146470
Coord C2 exon
chr3:151146471-151146597
Length
563 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
3' ss Seq
CCTCTGACTCTGCGATCCAGGCC
3' ss Score
5.81
Exon sequences
Seq C1 exon
GCGAGGGCTGAGGAGCTGGAGGAGGAGCTGGAGGCGGAGCGAGCAGCCCGTGCCCGTGTGGAAAAGCAGCGAGCTGAGGCAGCCCGAGAGCTGGAGGAGCTGAGTGAGAGGCTAGAGGAGGCTGGTGGAGCCTCTGCCGGGCAGCGTGAGGGTTGCCGCAAGCGTGAGGCTGAGTTGGGCCGACTGCGGCGGGAGCTGGAGGAGACAGTTCTGAGACACGAGGCCACTGTGGCTGCCCTGCGCCGCAAGCAGGCTGATAGCGCCGCAGAGTTGAGCGAGCAGGTAGACAGCCTCCAGCGGATCCGGCAGAAACTGGAGAAGGAAAAGAGTGAGCTGCGCATGGAGGTGGATGATCTGGGGGCCAGCGTGGAAACTCTGGCCCGTGGCAAG
Seq A exon
GTCTGCCTCCTTCCTGCCTCGAAATCAGTTTTGACTCTATACTGACCCTGCCCTCTGCCCTCATGACAATACACCACCGCAGCATTGACCTCCTGACCCCTGAATGCTTAACCTGGTGTCTAACCCCAGCTCCACAGCGGTCCTGACCGCTAACCCTGAGTGCTCAGTTTCCCTCCTTGGCTTGTTGACTCACACCCAAACCTCAGCTCTTCCAGCAGGAGTGTGACCCCAGCTCTTGACTCCTGAATTCAGACGTAGCACCTGCCCAACACTCACTGTCGTTGTCCCAACGTTGACCCCTCCCCCACCCCAAATCCTGACTCTGTCCCCAGCTGTAGAACCTAATACCGACTCACAGCCCTTGGGATGGGTTCTGAGACTCCCAATCCGTGCCAACAGTAGGAACCCAGACCCTGACCCCGGAACTCTGGTCTCCTTTGAATCTCTGGTCTCATACCTAGTGTTCTAGGTCCCAGTCCCAGGTCCCGGTCTCTTGACTGGCAGCCCCTGGACCCTGCCCTTGGATGCACAAACTTGTCTTGACCTCTGACTCTGCGATCCAG
Seq C2 exon
GCCAGTGCAGAGAAGCTGTGCCGGACCTATGAGGACCAGCTCAGCGAGGCCAAGATCAAAGTGGAGGAGCTGCAGCGGCAGCTGACTGACGCCAGCACCCAGCGGGGGCGGTTACAAACGGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.546 A=NA C2=0.395
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(15.0=81.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGAGCTGAGTGAGAGG
R:
GCTGAGCTGGTCCTCATAGGT
Band lengths:
345-908
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]