HsaINT0107900 @ hg38
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:34997251-34998421:+
Coord C1 exon
chr20:34997251-34997640
Coord A exon
chr20:34997641-34998294
Coord C2 exon
chr20:34998295-34998421
Length
654 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTCC
5' ss Score
3.24
3' ss Seq
CTCCCAACCTGGGATCCTAGGCC
3' ss Score
3.5
Exon sequences
Seq C1 exon
GCTCGGGCGGAGGAGCTGGAAGAGGAGCTGGAGGCAGAGCGGGCAGCCCGGGCCCGCGTGGAGAAGCAGCGTGCAGAGGCGGCGCGGGAGCTGGAGGAGCTGAGCGAGCGGCTGGAGGAGGCAGGCGGCGCATCCGCGGGGCAGCGCGAGGGCTGCCGCAAGCGGGAGGCGGAGCTGGGGAGGCTGCGGCGGGAGCTGGAGGAGGCGGCGCTGCGGCACGAGGCCACAGTGGCGGCACTGCGGCGCAAGCAGGCGGAGGGCGCGGCGGAGCTGGGGGAGCAGGTGGACAGCCTGCAGCGGGTGCGGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTGCGCATGGAGGTGGACGACCTGGCTGCCAACGTGGAGACTCTGACCCGCGCCAAG
Seq A exon
GTGTCCGTGCCTTCCTCACCCCATACCCACCCTGACTTTAAACCAATCCCGATCCCAGCAGCCAATACTGTTCCCACACCAGCCTCCACCCAGTACCTTATCCTGAGCCCTGACCTCTTCACCTGGTACACAACCCTCATTTCTCAGCCTCCTACCAGTCCTGACCTTAAGCCGTGACTCCCAAGCCCTGTTCCCTGACTCCAGGTCATTTCTGATCCAGCATCTACTTCCAGCCTCAGACCCTTGAACCAGCAGTAGTTGTGACCCTAGCCCTTGACTCCTGAACTCTGACTTAATACCTGTCCTCTCTTCCTGTCCTGAACCCCAGCACCCTAGCCTTAACCCCTGACCTTTCTACCACATAATCCTGACAGCTGACCTCTGACCATTGTCCCCAGGTGACTCCGCAGCTACCATCCCAACTCTCACCCTGACCCACTGCCCTGGGACTGGCCCAGCCCTGTCAGTTCTGACACCTGTTAAGCCCAGCAGTAGAATCTCTTTCCCTGACTTTGAACTTGGGGCTCTGCTCTCCCTTTGATTCCTGGGCCCACATCTAGCTTACCAGTCTCTGATCCCAGATCCTGCCATCTGATGCACAAACTTGTTCTGACATCTAACTCCTGACCCCTGACTCCCAACCTGGGATCCTAG
Seq C2 exon
GCCAGTGCAGAGAAGCTGTGCCGGACCTATGAGGATCAGCTAAGCGAGGCCAAGATCAAGGTGGAGGAGCTGCAGCGGCAGCTGGCGGACGCAAGCACGCAGCGTGGGCGACTACAGACGGAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814:ENST00000262873:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=NA C2=0.326
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100),PF0003816=Filament=PU(11.6=24.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGGAGCTGAGCGAG
R:
CTTGGCCTCGCTTAGCTGATC
Band lengths:
355-1009
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development