BtaINT0097389 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64895165-64895459:+
Coord C1 exon
chr13:64895165-64895257
Coord A exon
chr13:64895258-64895395
Coord C2 exon
chr13:64895396-64895459
Length
138 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
GGCTGCTCCTCTGCCCACAGGGC
3' ss Score
10.25
Exon sequences
Seq C1 exon
GGCACCCTCGAGGATCAGATCATCGAGGCTAACCCCGCCATGGAGGCTTTCGGCAATGCCAAGACCCTGCGCAATGACAACTCGTCCCGCTTT
Seq A exon
GTGAGTGGCTTTGGTGGGAGACTGGGTGGGGTTGGGGCAGGAGGGTGGGGAGGCGGGGAGACACAAGGTCTGGGGAGCCCTGGGTGGATGGAGCAGCACTGCCTGGGCCCCCGACTGAGGCTGCTCCTCTGCCCACAG
Seq C2 exon
GGCAAGTTCATCCGCATTCACTTTGGTCCCTCTGGGAAGCTGGCATCAGCGGATATTGACAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCCTCGAGGATCAGATCA
R:
AGCTGTCAATATCCGCTGATGC
Band lengths:
156-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development