RnoINT0096586 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151132447-151132726:+
Coord C1 exon
chr3:151132447-151132539
Coord A exon
chr3:151132540-151132662
Coord C2 exon
chr3:151132663-151132726
Length
123 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
GCACGGTTCCTCTGCTGCAGGGC
3' ss Score
7.71
Exon sequences
Seq C1 exon
GGCACCCTTGAGGATCAAATCATCGAGGCTAACCCTGCCATGGAGGCTTTTGGTAACGCCAAGACTCTGAGGAACGACAACTCCTCCCGTTTT
Seq A exon
GTGAGTGGGCACACTTGGGAAGTATGTAGCTGGGGGTTGGGGGGAAAGGAGTCAGTAGCCAGGAGGGCCCTGGTGGTAGGGACCCTCCACAGGACTGAGGGTGGCACGGTTCCTCTGCTGCAG
Seq C2 exon
GGCAAGTTCATCCGCATCCACTTTGGTCCCACTGGGAAGCTGGCCTCTGCGGACATTGACAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCCTTGAGGATCAAATCA
R:
CTGTCAATGTCCGCAGAGGC
Band lengths:
155-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]