GgaINT0010699 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2605304-2606246:-
Coord C1 exon
chr20:2606154-2606246
Coord A exon
chr20:2605368-2606153
Coord C2 exon
chr20:2605304-2605367
Length
786 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
CTCCCTGTAAATGCTTTTAGGGC
3' ss Score
7.28
Exon sequences
Seq C1 exon
GGCACCCTCGAAGATCAAATCATTGAGGCTAACCCAGCTATGGAGGCTTTTGGCAATGCCAAAACCATTAGAAATGACAACTCCTCACGTTTT
Seq A exon
GTAAGTGTCTTGGAAAGACATTGCTGATGTGCAGGATATATGTAAGCTAAATGCATCATCCGTAGCATTCTTGCTTTTGCATTGGTGGGGGCACAGAGCAGAGGTAGCTCTTCTTCCTAGGAGGACCGGACTGCTGGGGCAAGACTTCTGCTGGCTAAATTGGTGTAATGGATGGCATGTTGGTCAGAATGAACTGTCCCTATAATCAGGGGACAGTTGTAAAGTAAACAGCTTGGAGCTGGAGAGAAGTCTGTTCCAGGACCAGCACTGAGGGGCCAGCAACCAAAGCTCAGAGTGCTTGATAAACACGTGCCTTCTGGGCAGCTGCATCCCTTTTGTAAGCCCAGCCTGGGTCTGCATTGGGGTGTGGAGCTGATTGACCACAGGTGGCTTTGATGTCTGCTCTTGTGCCTTGTGGGGGATGGAGAGGCTGTGGGGCTGAGACTGCTCAGCACGTGATGACCAGGAGGCTGTGGGCAGACTCAGTATCACGCTGCCCCACAGGAGTGCTTAGTTTTCAGAGCAGGCCTGAGGACAGGGATTTATTTGTTGTGAGCAGAAGTTCTGCTTATCCAGTGTTTAAAGCCCCAGGCGATACTGCCTGACCCTCTACCAGAGAACTTCACCCACTTATCTCTCACAGCACAGTATCTTGCCTGGCATCAGCAGAAACCTATTAAGTGGGAAATTACCAGTCTGTTTTAGCTGTACGAGTTTACTAGGAGCTGCCCTGAGTTGTGCCTGTGTAGACAAGCCTGGTGTTTACCTCCCTGTAAATGCTTTTAG
Seq C2 exon
GGCAAGTTCATCCGCATCCATTTTGGCCCCTCGGGGAAGCTGGCCTCTGCAGACATCGACATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]