MmuINT0103644 @ mm10
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155617648-155617925:+
Coord C1 exon
chr2:155617648-155617740
Coord A exon
chr2:155617741-155617861
Coord C2 exon
chr2:155617862-155617925
Length
121 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
GCATGGTCCCTCCGCTGCAGGGC
3' ss Score
7.02
Exon sequences
Seq C1 exon
GGCACCCTTGAGGATCAAATCATCGAGGCTAACCCTGCCATGGAGGCTTTTGGCAACGCCAAGACTCTGAGGAACGACAACTCCTCCCGTTTT
Seq A exon
GTGAGTGGGCGCAGTCGGGAAGTATGTGGTTGGGGGTCAGGGGAGGAGAGTCAGTAGCTGGGGGGCCCTGGTGGAAGGGACCCTTGACAGGACTGAGGGTGGCATGGTCCCTCCGCTGCAG
Seq C2 exon
GGCAAGTTCATCCGCATCCACTTTGGTCCCACTGGGAAGCTGGCCTCTGCGGACATTGATAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652:ENSMUST00000092995:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCCTTGAGGATCAAATCA
R:
CTATCAATGTCCGCAGAGGCC
Band lengths:
155-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types