BtaINT0097428 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75124687-75125289:-
Coord C1 exon
chr5:75125191-75125289
Coord A exon
chr5:75124831-75125190
Coord C2 exon
chr5:75124687-75124830
Length
360 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
TTGCCCTCTGCTCCCTACAGCTG
3' ss Score
10.15
Exon sequences
Seq C1 exon
ATCTTCTGGAGAAATCTCGTGCCATCCGCCAAGCCAAGGAAGAGCGGACCTTCCACATCTTCTACTACCTGCTGTCTGGGGCTGGGGAGCACCTCAAGT
Seq A exon
GTGAGTTGTGGGCCCACCTTGGGGATCCCCCTGCAGTCAGGCTACACTGCAGTGAGGAAATGAAATCTCAGCCTGGGGGCAGGCAAGGAGAGCCTGACTTCTGTTCCTGGGCCAGCTGCAGGCTTGGCCCCTGTTTTGAACCAGGCCAGAGGGAGCCTGCGCAGGTCACTGTGCAGCTGCAGGCTTCTGGGCCTTGATGCTCTTGGGAAGGGGGCTCTGTGTGTGCCCGTCTCTCGTGCTGGGGAGACTCAGCATTCCTGGGGTGTTTTGGGGTGCTTCTCCATCTCCCACACCTTTGAGGTCACAGGGTTGACTGGAGCCTCCTGACCCTCACTGAACTTTGCCCTCTGCTCCCTACAG
Seq C2 exon
CTGATCTCCTGCTGGAGTCATACAACAAATACCGCTTCCTGTCCAATGGGCATGTCACCATTCCCGGGCAACAGGACAAGGACATGTTCCAGGAGACCATGGAGGCCTTTCGGATTATGGGCATCCCAGAGGAAGAGCAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402:ENSBTAT00000013737:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAAATCTCGTGCCATCC
R:
CCATCTGCTCTTCCTCTGGGA
Band lengths:
238-598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]