HsaINT0107995 @ hg38
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:7579]
Coordinates
chr22:36320220-36320896:-
Coord C1 exon
chr22:36320798-36320896
Coord A exon
chr22:36320364-36320797
Coord C2 exon
chr22:36320220-36320363
Length
434 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TTGCCCTCCACCCCTTACAGCCG
3' ss Score
9
Exon sequences
Seq C1 exon
ATCTTTTGGAGAAATCTCGTGCTATCCGCCAAGCCAAGGAAGAACGGACCTTCCACATCTTCTATTATCTCCTGTCTGGGGCTGGAGAGCACCTGAAGA
Seq A exon
GTGAGTAGTTGGCCTGCAGCCTGACACCGGGGCTGCCGGGCTCTGGGCCTCTTGCCAGAATTGGACCGTAGACATCATTTGGGAAATGAAAACTTTTGGCCTTGGGTTTAACGGGGAGAAGTGAGAGTGACTCCTGTTCTCTGCGCCATCCTAAGGACTTGGTCTTCTGTTTCTGACCATGCCAGAGAAAAGCTAGGGTGGGTTGCACATGTAGCTGCAAATCACAGGACCTGGCGCTCTCCTGGGCCAGGAGACGGGAGTGTCAGAGTCTCAGACACTGAGGAAAGCTGAACGTCACTGGCTACTCTGCGGTTTCCAGGGTGCGTCAGGGCTCAGGGTCTGTCCCAGTCTCTCCAACCTTTGAGGTCACAGCGCTGATGGAGCCTCCACTTTCAGCACCTCGCTGAGGCGCCCTTGCCCTCCACCCCTTACAG
Seq C2 exon
CCGATCTCCTGTTGGAGCCGTACAACAAATACCGCTTCCTGTCCAATGGACACGTCACCATCCCCGGGCAGCAGGACAAGGACATGTTCCAGGAGACCATGGAGGCCATGAGGATTATGGGCATCCCAGAAGAGGAGCAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345:ENST00000216181:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGAAATCTCGTGCTATCCG
R:
CCATTTGCTCCTCTTCTGGGA
Band lengths:
238-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development