HsaINT0107995 @ hg19
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin, heavy chain 9, non-muscle [Source:HGNC Symbol;Acc:7579]
Coordinates
chr22:36716265-36716941:-
Coord C1 exon
chr22:36716843-36716941
Coord A exon
chr22:36716409-36716842
Coord C2 exon
chr22:36716265-36716408
Length
434 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TTGCCCTCCACCCCTTACAGCCG
3' ss Score
9
Exon sequences
Seq C1 exon
ATCTTTTGGAGAAATCTCGTGCTATCCGCCAAGCCAAGGAAGAACGGACCTTCCACATCTTCTATTATCTCCTGTCTGGGGCTGGAGAGCACCTGAAGA
Seq A exon
GTGAGTAGTTGGCCTGCAGCCTGACACCGGGGCTGCCGGGCTCTGGGCCTCTTGCCAGAATTGGACCGTAGACATCATTTGGGAAATGAAAACTTTTGGCCTTGGGTTTAACGGGGAGAAGTGAGAGTGACTCCTGTTCTCTGCGCCATCCTAAGGACTTGGTCTTCTGTTTCTGACCATGCCAGAGAAAAGCTAGGGTGGGTTGCACATGTAGCTGCAAATCACAGGACCTGGCGCTCTCCTGGGCCAGGAGACGGGAGTGTCAGAGTCTCAGACACTGAGGAAAGCTGAACGTCACTGGCTACTCTGCGGTTTCCAGGGTGCGTCAGGGCTCAGGGTCTGTCCCAGTCTCTCCAACCTTTGAGGTCACAGCGCTGATGGAGCCTCCACTTTCAGCACCTCGCTGAGGCGCCCTTGCCCTCCACCCCTTACAG
Seq C2 exon
CCGATCTCCTGTTGGAGCCGTACAACAAATACCGCTTCCTGTCCAATGGACACGTCACCATCCCCGGGCAGCAGGACAAGGACATGTTCCAGGAGACCATGGAGGCCATGAGGATTATGGGCATCCCAGAAGAGGAGCAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345-MYH9:NM_002473:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGAAATCTCGTGCTATCCG
R:
CCATTTGCTCCTCTTCTGGGA
Band lengths:
238-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)