MmuINT0103722 @ mm10
Intron Retention
Gene
ENSMUSG00000022443 | Myh9
Description
myosin, heavy polypeptide 9, non-muscle [Source:MGI Symbol;Acc:MGI:107717]
Coordinates
chr15:77790704-77791146:-
Coord C1 exon
chr15:77791048-77791146
Coord A exon
chr15:77790848-77791047
Coord C2 exon
chr15:77790704-77790847
Length
200 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TGCCTTTCTTCTTCTCACAGCTG
3' ss Score
10.74
Exon sequences
Seq C1 exon
ATCTTCTGGAGAAATCTCGTGCTATCCGCCAAGCCAAAGAGGAGCGGACCTTCCACATCTTCTACTACCTGCTGTCTGGGGCCGGAGAACACCTGAAGA
Seq A exon
GTGAGTCGGGCCCCCGCTGGGAGGGGAAGAGAAGCGGGACACAGGCAGCGCTTCAGCCTCAGAGCTTTGATGCTCTGAGTTATGTAATTGCTAGCTGTATCTGCTGAGTCAGCAGAGAGCGGTCCTGGGCATCACATCACAGCATGCCTGGAGCCTGTGAGTCTCATACCTCACTGACCATGCCTTTCTTCTTCTCACAG
Seq C2 exon
CTGATCTCCTGTTGGAGCCATACAACAAATACCGCTTCCTGTCCAACGGGCACGTCACCATCCCTGGGCAGCAGGACAAGGACATGTTCCAGGAGACAATGGAGGCCATGAGAATTATGGGCATCCCAGAGGATGAGCAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022443:ENSMUST00000016771:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAATCTCGTGCTATCCGC
R:
CCATCTGCTCATCCTCTGGGA
Band lengths:
236-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types