DreINT0100022 @ danRer10
Intron Retention
Gene
ENSDARG00000001014 | myh9b
Description
myosin, heavy chain 9b, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-998]
Coordinates
chr3:5258099-5258919:-
Coord C1 exon
chr3:5258821-5258919
Coord A exon
chr3:5258243-5258820
Coord C2 exon
chr3:5258099-5258242
Length
578 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
3' ss Seq
GTACAAATTTGCTTCATCAGCTG
3' ss Score
3.51
Exon sequences
Seq C1 exon
ACCTGCTGGAGAAGTCCAGAGCCATCCGTCAGGCTAAAGAAGAGCGAACCTTCCACATGTTCTACTACATGCTGACCGGCGTAGGAGACAAACTTCGCT
Seq A exon
GTAAGCGTCTGCACTGCTTTTACGTCAAGCATAAAGAGTTGAAGTTAGAATTATTCACCCTCCTTTTCTTTCTTAAAGTTTGACCAGATGATGTTTAACCGATTCAGGAATTGCTCACAGTATTTCCTATAATATTTTTTCTTCTGGAGAACGTCTTATTTGTTTTATTTCAGCTAGAATTAAAGCAGTTTTTAATTGTTTTAAAGCCATTTTAGGGTCAATATTATTGGTCCCCTTTAGCAATATTTATTTTGGATTGTCTCCCGATCAAACCACTGTTATACAATGACTTGCCTAATTATCCTAATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGAATACTAAATATTACTTACTGTCATCATGGCAAAGATAAAAGAAATCATTTATTAGAGATGAGTTATTAAAACTATTATGTGTAGAAATGTGTTCTGAACAGTTTTTCTCTTAATTAAACAGAAATTGGGGTAAAGAAATACAGGGGAGCTAATAATTCTGACTTCATCTGTAAATGACTGCAGTCTTCATACAAAAGTTTGTCAATACAAACTGTACAAATTTGCTTCATCAG
Seq C2 exon
CTGAGCTGTGTCTGGAGGGCTACAATAAGTACCGCTTCCTGTCCAATGGGAACGTGACCATCCCGGGACAGCAGGACCGAGACATGTACGTGGAGACTGTGGAGGCCATGAGGATTATGGGCTTCTCTGAGGAGGAGCATGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001014:ENSDART00000137105:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTCCAGAGCCATCCGTC
R:
CGACATGCTCCTCCTCAGAGA
Band lengths:
234-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]