GgaINT1018592 @ galGal4
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
myosin-9 [Source:RefSeq peptide;Acc:NP_990808]
Coordinates
chr1:51634969-51636061:+
Coord C1 exon
chr1:51634969-51635067
Coord A exon
chr1:51635068-51635917
Coord C2 exon
chr1:51635918-51636061
Length
850 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TTCTCATTTTTTTTCTTAAGCTG
3' ss Score
7.35
Exon sequences
Seq C1 exon
ATCTATTGGAGAAGTCACGCGCAATTCGTCAAGCCAAAGAGGAGAGAACCTTTCACATCTTCTACTACCTACTGTCTGGAGCAGGAGAACATTTGAAGA
Seq A exon
GTAAGTTTGGTTTTTTGTTGTAGTTATGGAGTTGTCTTTTTACTGCAGCAGAGGGTCCACGCTCTTTATGCACTTGCACCTGTTCTTTCATAGTTTCTTGTCTCTGCCTCTTAGCTATGGTCACCCCTTCTCCACTTCTGCATACGCATACATACCTCTGCCCTCCCCCTGCACTTCTCAGTTCCTGAAAACTTGCTTCTCTGGTTCCTTCCTGCACTTGTCTCCTTGCCAGAATTGAATCTACACCCTTCCTTATCTAAATCACTGTCCTGTGTTTAGTCTAGTCTTGTATGATGTAAGCCCTTCTTGTGCAGGAATGATCCTACTGTGATGTGCTCAGCATTTAACTGAATGGAGCAAAGCATCTGGCACCTATGCAACCCTAGGATGCTAGCACATTTACCTTTAAAGCCTCAGCCTAATATCAGACTGCATGTTGCGTGAGAGCTGCAAATTGATCTGGAGGAATAACAGAAAGAGAGGACTTTTCTCGTAGTTGCTACTATTTCAAGAGCTGTATATTAACCTTCGTGTGACTTGAAACAACTAAGATATCTGAAGTTGAAGGCAAATTTACTTCAAAGTTAATCCCTGCATTTTTAGACTTGGGGCATAATGATGATTGGCACTTTAGTGGAGTATTCCAGATGAAAGAATAGAAAGAAATAAGGCAGAAAAACTCAATTTTTATTTTAAAATAAAATAATATTTTCATCTGTTAGTAAAACTGATCTTAATCTTAGATTCATCCAGCACCTGCTAGTATATGCAGGTGAGAAATCTGCTTTCAGTGGTAGCTTGTCTATTAAAATAACAGCACAGTAACTTGTTTCTCATTTTTTTTCTTAAG
Seq C2 exon
CTGATCTACTTCTGGAGCCTTACAACAAATACCGCTTCCTTTCCAATGGACATGTTACGATCCCGGGTCAGCAAGACAAAGATATGTTTCAGGAGACCATGGAAGCAATGAGGATCATGGGCATCCCAGATGAGGAACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATTGGAGAAGTCACGCGC
R:
TTGTTCCTCATCTGGGATGCC
Band lengths:
238-1088
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]