BtaINT0097440 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30240019-30240270:-
Coord C1 exon
chr19:30240221-30240270
Coord A exon
chr19:30240137-30240220
Coord C2 exon
chr19:30240019-30240136
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GACGTTGCTTCTCTTCTCAGGCG
3' ss Score
9.39
Exon sequences
Seq C1 exon
ACACCCTCACTTTGTGCGCTGTATAATTCCCAACGAGACCAAAACCCCAG
Seq A exon
GTAAGATGCCCGCTGGTCTGGAGGCGGCACTCGGGTCGGGTTTTAGGAGAGTCTGTGCGAAGCTGACGTTGCTTCTCTTCTCAG
Seq C2 exon
GCGCCATGGAGCACAGCCTGGTCCTGCACCAGCTGCGCTGTAATGGGGTGCTGGAGGGCATCCGCATCTGCAGGAAGGGCTTCCCCAACAGGATCCTCTACGGGGACTTCAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803:ENSBTAT00000001120:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(2.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTCACTTTGTGCGCT
R:
CTCTGTTTGAAGTCCCCGTAGA
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development