GgaINT0127419 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:603541-603833:-
Coord C1 exon
chr18:603746-603833
Coord A exon
chr18:603659-603745
Coord C2 exon
chr18:603541-603658
Length
87 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TTTATACTCTGAATTGCTAGGTG
3' ss Score
6.29
Exon sequences
Seq C1 exon
GAGAACTTAAACAAGCTGATGACCAATCTGAGGAGCACCCACCCCCATTTTGTACGCTGTATCATCCCAAATGAAACAAAAACACCTG
Seq A exon
GTAAGAGACTCACCCACAGACAACCTTCAGTATCTCTTCTCTGCTGCGCTACAGAATACAGCACTCATTTATACTCTGAATTGCTAG
Seq C2 exon
GTGCCATGGAGCATGAGCTGGTTCTGCACCAACTGAGGTGTAATGGTGTGCTGGAAGGGATCAGAATTTGCAGGAAAGGATTTCCCAACAGAGTCCTGTATGCAGATTTTAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAATCTGAGGAGCACCC
R:
CAGGACTCTGTTGGGAAATCCT
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]