MmuINT0103460 @ mm9
Intron Retention
Gene
ENSMUSG00000020908 | Myh3
Description
myosin, heavy polypeptide 3, skeletal muscle, embryonic [Source:MGI Symbol;Acc:MGI:1339709]
Coordinates
chr11:66903691-66903979:+
Coord C1 exon
chr11:66903691-66903778
Coord A exon
chr11:66903779-66903861
Coord C2 exon
chr11:66903862-66903979
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGTCTTGCCTGTGTTCTTAGGGG
3' ss Score
7.03
Exon sequences
Seq C1 exon
GAAAACTTGAACAAGCTGATGTCCAATTTAAGAACCACACACCCACACTTTGTACGCTGTATAATACCCAACGAAACCAAGACCCCAG
Seq A exon
GTGAGGCATCTGCCAGCCCTCAAGGTGCTGCTCAGTCTTAAGGGCTTCTGGGTGAAGCTCAGGGGTCTTGCCTGTGTTCTTAG
Seq C2 exon
GGGCCATGGAACACAGCCTTGTCCTGCACCAGCTCAGGTGTAACGGGGTGCTGGAAGGCATCCGGATCTGCAGGAAGGGCTTCCCCAACAGGATCCTGTATGGAGACTTTAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020908-Myh3:NM_001099635:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAACAAGCTGATGTCCA
R:
ATCCTGTTGGGGAAGCCCTTC
Band lengths:
178-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: