HsaINT0107728 @ hg38
Intron Retention
Gene
ENSG00000109063 | MYH3
Description
myosin heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:7573]
Coordinates
chr17:10641085-10641372:-
Coord C1 exon
chr17:10641285-10641372
Coord A exon
chr17:10641203-10641284
Coord C2 exon
chr17:10641085-10641202
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TATCTCGCTTCTGTTCCCAGGGG
3' ss Score
9.67
Exon sequences
Seq C1 exon
GAAAACCTGAACAAGCTGATGTCAAATTTAAGAACTACTCACCCTCATTTTGTGCGTTGTATAATTCCCAATGAAACCAAAACTCCAG
Seq A exon
GTGAGACACCTGCTGGCTCGCTAGGTGGTGCTCAGTTTTTAAGAAATTCTGTGTAAGGCTGATATCTCGCTTCTGTTCCCAG
Seq C2 exon
GGGCTATGGAACACAGCCTTGTTCTGCACCAGCTGCGGTGTAACGGTGTCCTGGAGGGCATCCGCATCTGCAGGAAAGGGTTCCCAAACAGGATTCTCTATGGCGATTTTAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063:ENST00000583535:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGAACAAGCTGATGTCAA
R:
GAACCCTTTCCTGCAGATGCG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development