BtaINT0097651 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56565983-56566979:+
Coord C1 exon
chr20:56565983-56566103
Coord A exon
chr20:56566104-56566526
Coord C2 exon
chr20:56566527-56566979
Length
423 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CATCGACTACTTCTTCACAGGCC
3' ss Score
7.22
Exon sequences
Seq C1 exon
GCTGGCCGCCACTTCAGAGGTGGGCGAGCAGCCCTGGAAATTCTACTTCAAACTTTACTGCTTCCTGGACACAGACAACGTGCCAAAAGACAGCGTGGAATTCGCCTTTATGTTTGAACAG
Seq A exon
GTAAATGGAGTTCTTAGGTTCCTTTGCAGACACGCAGGGGTGAACCCATTCATACCCTTCTCAGGTTAACTGCTAGTCCTTAGACCCCAGGCATGGCCGTAGAATTCTCAGCGTCACCAGTGAGGGATGCTCTTTTATTCACTGGTAGAAGGAAACTTGGGTACGTTTCATATGAATGCCTGTACCAGGAACTGTCCGAGTTGGGGATAGGGAGGAGTGAGAGGGAGAGGAAATAATAAATACACGTTTTCAGTGGTACCCATTGCCAGGGAGAAATTTAAAGCCACAAAGGGGTGTTAGGGTACCATTTTATGGAAGATGGCATTTGAGAGAAATCCTGATGGTTTGAGGGAGCAAGCCAGGTGGGTGTCGTGTCACACGGCAGTGTCTCGCCCCATGAAGCCATCGACTACTTCTTCACAG
Seq C2 exon
GCCCACGAAGCCGTCATCCATGGCCACTACCCGGCCCCCGAGGAGAACCTGCAGGTGCTGGCTGCCCTGCGGCTCCAGTATCTGCAGGGGGATTACGCACCGCACGCCCCGGTACCGCCCCTCGAGGAGGTCTACTCGCTGCAGAGGCTCAAGGCCCGCATCAGCCAATCCACCAAGAGCTTCACGCCGGGGGAGCGGCTGGAGAAGAGGCGCACGAGCTTCCTGGAGGGGACCCTGCGGCGGAGCTTCCGGACGGGCTCCGCGATACGGCAGAAGGCAGAGGAGGAGCAGATGGTGGACATGTGGGTCAAGGAGGAGGTGTGCTCCGCGCGGGCCAGCATCCTGGACAAGTGGAAGAAGTTCCAGGGCATGAGCCAGGAACAGGCCATGGCCAAGTACATGGCCTTGATCAAGGAGTGGCCTGGGTACGGGTCGACGCTCTTCGACGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126:ENSBTAT00000026812:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0078818=RA=PD(0.1=0.0),PF0037313=FERM_M=PU(9.7=39.0)
A:
NA
C2:
PF0037313=FERM_M=PD(89.1=97.4),PF0088714=ACBP=WD(100=22.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAAAGACAGCGTGGAAT
R:
CACATGTCCACCATCTGCTCC
Band lengths:
346-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]