GgaINT0096759 @ galGal3
Intron Retention
Gene
ENSGALG00000012954 | MYO10
Description
NA
Coordinates
chr2:77347211-77348558:+
Coord C1 exon
chr2:77347211-77347331
Coord A exon
chr2:77347332-77348105
Coord C2 exon
chr2:77348106-77348558
Length
774 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TATCTTTGTCCCCTCTTTAGGCT
3' ss Score
9.9
Exon sequences
Seq C1 exon
GCTTGCTGCCACTGCTGAAGCTGGGGAGATGCACTGGAAATTCTACTTCAAGCTCTACTGCTTCCTGGACACAGAAAATGTCCCAAAAGATAGTGTGGAATTTGCCTTCATGTTTGAGCAG
Seq A exon
GTAAGGAGATAGGTTTTATTTTGAGGCACTTTTAAGAGAAGGAAGAAGCAAAAGGCCTAGTCACCACGGGAATGTTCTGACTGAGCATCTTGTTTAACTAAACGTGCTTCAAGCTCAAGCAGCATCAGCTTATGCTGACATAACTGATTCACCTTGAGTTTCCACAAGATTAAATTGGTTGTGCAAAGATCCAGCATTTTAGTCTTGGTTCAGAATCACAATCCTTATGCTACAGACCTCAATAACATATAAGCATTCTGTTGATTTTATTATTAATTTCAAGATGTCCTGTTTTCCCTCAGTCATGTTTATTACAAAGTTGTGGTAGGGCTTTGCTTGTTTGGCTGGAAACAACAGTTTCACAGTCAGATTCTTAATGCAGTAAGTAAAACCAGATAGCCATTTCTTCCTAACGTATAGGTGCTTAGATGACATCCCAAATAAGCATTTTGATCCCAATTTTCTCCCCTTTACATGTTATTTTCCTTTTTAGTAATCCAGTTTTTCCTACACAATTGGGTTCTCAAAGAGCTGTACTAGTAACTGTAAATTCCCCTTGGGCAAGACCATCAATTGCCTTGCAGTTCTTCTGGTAAACCCTGCCTTATCCAGCTGAACAAAATTGGAATGAGAATTTACCACAGCTGATTGATGGGATAGATTATTTATTTCAGATCCAGGGTTTGCTTTGCACAAAGTCTACGTCCTGTTTCTCTCTCTGTCTTTTTAGAGACTTTGTTTGTGCATGAAAAGCTATCTTTGTCCCCTCTTTAG
Seq C2 exon
GCTCACGAAGCAGTGATTAGAGGACACTATCCTGCTCCTGAAGAAACCCTCCAGGTCCTTGCAGCTTTGCGTCTCCAGTACCTTCAGGGAGATTACACTGTGCATACCACCATACCAGACCTGGAGGAAGTCTATCCCTTGCAGAAGTTGAAGTCTCGGATTACGCAGTCTACCAAAACATTCACTGCAACAGAGAAGGCTGAGAAGAAGCGAGCCAGCTTTCTTGAAGGAACGCTGCGGAGGAGTTTTCGCAGTGGCTCTGTCAGCAAACAGAAGGTTGAGGAGGATCAGATGTTAGACATGTGGGTCAAAGAGGAAATCTCAGCTTCCAGGACTAGTATTATTGACAAATGGAAAAAACTGCAGAGGATGAACCAGGAGCAGGCTATGGCAAAGTATATGGCTTTGATTAAGGAATGGCCTGGCTATGGGTCAACACTGTTTGATGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954:ENSGALT00000021128:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0078818=RA=PD(1.4=2.4),PF0037313=FERM_M=PU(10.2=41.5)
A:
NA
C2:
PF0037313=FERM_M=PD(88.6=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTGAAGCTGGGGAGAT
R:
TCCTTCAAGAAAGCTGGCTCG
Band lengths:
342-1116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]