MmuINT0103891 @ mm10
Intron Retention
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25807057-25808188:+
Coord C1 exon
chr15:25807057-25807177
Coord A exon
chr15:25807178-25807735
Coord C2 exon
chr15:25807736-25808188
Length
558 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTGTCTGTCACCTCCTTTAGGCC
3' ss Score
10.28
Exon sequences
Seq C1 exon
GCTAGCTGCCACGTCAGAAGCCGGGGACGCGCCATGGAAATTCTACTTCAAACTTTATTGCTTCCTGGACACCGACAGCATGCCAAAAGACAGCGTGGAGTTTGCGTTTATGTTTGAACAG
Seq A exon
GTAAAAGGAACTCCAAGAGACAGATTCTTTTCCTTTGTCAGAGACAAGAGAGAGAAGCCCATTACTGCAGCAAATAAATAAACTGCTAAAGTCTGTAGGATTAGGTGCGGTAGCAGACTTACCAGCAAGGAAAAGCTAACCACTCACTGTGGAATGAGCACTCGGTTTGAACACCACTGCCAAGACACTTGATGTGCCAGAGTCAGGGGATACTCAGGCAGGGCACCTCCACTCTCTCAGAGGAGAAGGGGAGGGGGAGTAGAGGGGGGACTGGGAGGGGGACAGCAATCAGGATGTAAAGTGAATTTAAAAAAAGTATCACTGCCAAGAGACCATAGGAGTAAAAGCCACTCCAGGGTTGGATGACACCCATGAAGGGGAGGAATTTGGCTTGGAAGCGGCAGGCCGTGCTTTGCTAGGAGAAATCCAAGTGGAAACGTGGGGGTAGGTGGGTGCTTTGCGGGGGAGGAATTTAAGCTTAAAAGGGAGGCTGGGATACAGTCTGCATGGCATGAGTAGAGGTTTCCTGACATATTTGCTGTCTGTCACCTCCTTTAG
Seq C2 exon
GCCCACGAAGCCGTCATCCATGGCCACCACCCAGCCCCTGAGGAAAGCCTCCAAGTGCTGGCTGCCCTGAGACTGCAGTATCTGCAGGGCGACTATACCCCGCACACCTCCATCCCACCCCTCGAGGAGGTTTACTCTGTGCAGAGACTCAGAGCTCGCATTAGTCAGTCGACCAAAACCTTCACCCCGTACGAGCGCCTCGAGAAGAGACGGACCAGCTTCCTGGAGGGCACGCTGCGGCGGAGCTTCCGGACCGGGTCGGTGGTTCGGCAGAAGGCGGAGGAGGAGCAGATGCTGGACATGTGGATCAAGGAGGAAGTCTGCTCGGCTCGCACCAGCATCATTGACAAGTGGAAGAAACTGCAGGGGATGAACCAGGAACAAGCCATGGCCAAGTATATGGCCCTGATCAAGGAGTGGCCTGGTTATGGATCAACACTCTTTGATGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272:ENSMUST00000110457:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0078818=RA=PD(0.1=0.0),PF0037313=FERM_M=PU(9.7=39.0)
A:
NA
C2:
PF0037313=FERM_M=PD(89.1=97.4),PF0088714=ACBP=WD(100=21.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCATGCCAAAAGACAGC
R:
ATCCACATGTCCAGCATCTGC
Band lengths:
356-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types