RnoINT0096769 @ rn6
Intron Retention
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:78064974-78066151:+
Coord C1 exon
chr2:78064974-78065094
Coord A exon
chr2:78065095-78065698
Coord C2 exon
chr2:78065699-78066151
Length
604 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGTCTGTCACCTCCTTACAGGCC
3' ss Score
10.86
Exon sequences
Seq C1 exon
GCTGGCTGCCACGTCAGAAGCTGGAGACGCACCATGGAAATTCTACTTCAAACTTTATTGCTTCCTGGACACCGACAGCATGCCAAAAGACAGCGTGGAGTTTGCATTTATGTTTGAACAG
Seq A exon
GTAAAAGGAACTTTGAGAAACAGATTCTTTTCCTTTGTTGGAGGCGAGAGAGAAAACCCATTGCTACAGCATATAAATGAACTGCTAAAGTCTGTAGGATTGGCCATGGTAGTAGACTTGCCAGCAAGGAAAAACTAGCCACTCACTCTGTAGAATGAAACCATACATGCTCAGTCTAAACACCGCTGCCGGGAGACTTGATGTGCCTGAGTCAGGGGATCCTCAGGCAGGGCCTCCACTCTCTCAGAGGAAGAGGGGACTGGAACTGTGAGAGGGACAGCGATCAGGATGTAAAGTGGATTGTAAAAAGAAGAAGAAAAGGAAAAAAAAAAATCACTGCCAAGAGACTGGGGGCGGGGGGTAACAGATACTCCAGGGTTAGAGGACACCCATGAAGGGGAGGGATTTGGCTTTGAAGCAGTGGGCTGTGCTTTGTTAGGAGAAATCCAACTTGAAGTGTGGGGGTAGGAGGGTGCTTTGCGGGGGAGGAATGTAAGCTTAAAGGAAGGCTGGGGTACAGTCTGCATGGCATGAGTGACTGGCCTTACGGCCTTCTGTACAGAGAGGTTTCCTGACCCTGTCGCTGTCTGTCACCTCCTTACAG
Seq C2 exon
GCCCATGAAGCAGTCATCCATGGCCACCACCCAGCCCCTGAGGAAAGCCTCCAAGTGCTGGCTGCCTTGAGACTCCAGTACCTGCAGGGCGACTATACCCTGCACACCTCAGTCCCACCCCTCGAGGAGGTCTATTCTCTGCAGAGACTCAAAGCTCGCATCAGTCAGTCAACCAAAACCTTCACCCCGTACGAACGCCTGGAGAAGAGGCGGACCAGCTTCCTGGAGGGGACACTGCGAAGGAGCTTCCGAACCGGGACGGTGGCTCGGCAGAAGGTGGAGGAGGAGCAGATGCTGGACATGTGGATTAAGGAGGAGATCTGCTCGGCTCGAGCCAGCATCATAGACAAGTGGAAGAAACTGCAGGGAGTGAGCCAGGAACAAGCCATGGCCAAGTATATGGCCTTGATCAAGGAGTGGCCTGGTTATGGATCAACACTCTTCGACGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161:ENSRNOT00000014022:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0078818=RA=PD(0.1=0.0),PF0037313=FERM_M=PU(9.7=39.0)
A:
NA
C2:
PF0037313=FERM_M=PD(89.1=97.4),PF0088714=ACBP=WD(100=22.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGACAGCGTGGAGTTTGCA
R:
ATCCACATGTCCAGCATCTGC
Band lengths:
344-948
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]