DreINT0100288 @ danRer10
Intron Retention
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42759910-42762415:-
Coord C1 exon
chr2:42762298-42762415
Coord A exon
chr2:42760366-42762297
Coord C2 exon
chr2:42759910-42760365
Length
1932 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
GTGTTGTGAATCTCCCTCAGGCC
3' ss Score
8.01
Exon sequences
Seq C1 exon
GTTGGCCAATAAAGAGCAGGACGGAGAGAGCTGGAAGTTTTATTTCAAGCTGTTCTGTTTCTCTGAACCTGAGAATGTACCTGCTGACAGTGTGGAGTTTGCATTCATGTTCGAGCAG
Seq A exon
GTTTGATTTCAATTAGTATCTTTAATATCTTTAAATATATTTCTTATTATGGATTTTTTTTTTAATCTGTTGAAGGAATAGTTTCAAACCAGATTGGAAAAGAGCTTTTGCAAGTCTAAGCAACACTGCAGCCTTTCATTCCCGAATGAATCTATTTTTTGAACAGTGATTCAATTGGCTATTCATAAAGACGGTCACTTAGTTTCTAAATGAATCAAAAATAGTTTGAATTAATTATTTAATAAATCACTCATTAAGTTTACGGTTACACAAGACACGTAAACTAAAACTTGCACAAACATTCTAAAACAACAACAACAATCTTTTAAAAAAACAATAAAGTGTGTGAACATGTACATTTTCATGTAAATATAACAAAGTAAAATGCATAGATGCTTGCATGTTGACATTATTACCAGGGAAAAAACATTTTTAAATACAGTCTTGCAAAAAGTTCATTTGCATTACTAGGTTTTTGATTTGCATGTAAACTGGTAAACCAAGTTCTTTCAGTGAGTAGTTTTGATAGGTATCAGCACACTTAAGAATGTAAATGTTCTCATATTCAAAATCATTCCATTTACACAGATCCATGAATACAACCAAAAACAGCGTATTGTGCATACAGTAGCGATGCAACCTGGTATAGAATCTGCACACATACACATTGTTTTGTTCACACACAACACATTTATGTAGTCTGATATTCCTCTTTTGGTTGTCAGGTTCCCTCAGGTTCCAATATAGGCTGAATAACATTTTTTGTTGTTAAATAGCATGATTTTCACTTTTGAATAGTTTGCGTTTTGAAGAGTTTGTTCACCCAAAAATGAAAATTCTGTTATTAATTACTCGTCTTCTTAAAAACACAAATTAAGATATTTTAGATGAAATTTGAGTGCTTCCTCATTCTCCAAAGACAGCAATAGACTAATGACATTCACAGTCTAGGAAATGAACCAAAAACACTGTCTTAACATTCCATGTGACTTCAGTAGTTCAAACTGTAGCAATACAGCTCCAAGAACACTTTTGTGCACCAAAAAACTGTAAATAAAATAAAATAAATAAATAAATAAAATTGTCTATTGTTTTGACTGTTGTCTTCTCTTCTGTGTCAGGTCAGGGTTCACAACAAGCGTCCTGATGCCCATAATAAATGTGCACTCTAATCTGATGTAGCAGACATAGGCAAAGTCTTTTTTTCTTTTTTTGTCTGGTGCATAGAAGTGTTCTTGGAGCTTAGTGTGATTACAGTTGAAGTCACTTAGAATGTTTTGACAATATTTTTGGTTCCTTGACTAGACTTTGAACGTCTCTGCAATGTTTCTGTCAATGGAGAATGGGGGATGAACAAAAGTCTCCAGGCAATGGTGTAATTAATTACAGATTTTTCTTTTTTTTTGTTGAACTAGCCCTTTAAGGCCCTCATAATGCAATCATGTATGCACAGTAAAATTTTAATGCATCTAATGACTTTAAGAAAAAAAGGGATTTCTGTTCTGCATTCTTTACTGTAAACTTTCCTTTAAAGTCCCATGAAGTGCTTTGAAATGTGCAATTTTTATTTGTAATTTGATGTAAACTGCACTGAAACAGGGTAGGACATATAGTAGCTCCTCCCCTTTATAAAAAAATAGCCAATAGCGTTAGAGCTCTGCCAGTGTGAGTGGTATCTATCAAAAGAAATGAAATGAGAAGCATCTTGAAGGGGGCGGGGAATGTCAGAAAACATTACTAGAGAGCATTTGATTGGTTATGATTTAATGAGAAACTAAAGTATAAGGTAATGTCAAAAAAAAATAATTGAGAAACTGTTTTGGAGTACACACGCTTATAGATGTATTCAAAACTAACAAATTTAAACTAACATCTAAAAAAATGTATTTTCATTTTACGAGACCTTTTAAATGTGTTGTGAATCTCCCTCAG
Seq C2 exon
GCCCATGAAGCAGTCATCAGAGGTCGGTATCCTGCCCCAGAAGAGACTCTGCAGTTTCTGGCAGCCCTGCGTCTGCAGTATCTGCTGGGAGATTACAGTACCCAGAGTGCCCTGCCGGAGCTGGATCAGGTTTTCCCCATGGAGCGACTGCGAGCGCGGGTACAGCAGTCGGCACGGAGCTTCGCCTCTGCCACACCGTCCACCGACAGAAAGAGGAGCAGTTTTCTGGAGGGCACACTGAGGCGGAGCTTCCGCGGGACACTGGGGCGACAGCGCCAAGAGGAGGAGCCTGCAGCCATAGAGGTGTGGCTACAAGATGAGAAGGCGGGGCTAAAGAGTTGTTTGGTGGAGAAGTGGCGTAAACTGCAGGGGATGGAGCAAGATCAAGCCATGAAAAAATACATGGGTCTTATTAAGGAGTGGCAGGGGTATGGATCCACACTGTTTGATGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004:ENSDART00000140159:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0078818=RA=PD(16.3=35.0),PF0037313=FERM_M=PU(10.2=42.5)
A:
NA
C2:
PF0037313=FERM_M=PD(88.6=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAATAAAGAGCAGGACG
R:
GTGCCCTCCAGAAAACTGCTC
Band lengths:
352-2284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]