BtaINT0098045 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006377 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr4:77327906-77329853:+
Coord C1 exon
chr4:77327906-77328113
Coord A exon
chr4:77328114-77329629
Coord C2 exon
chr4:77329630-77329853
Length
1516 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
ACCTCCTACCGGCTCCCCAGGCA
3' ss Score
7.47
Exon sequences
Seq C1 exon
GTATAAGATGACCTGTGAGTACACGTGGCCGAATCATCTGCTGGGCTCCGATAAGGCGGCCGTGGGCGCTCTCCTGGAGCAGCATGGGCTGCAGGGGGACGTGGCCTTTGGCCACAGCAAGCTCTTCATCCGTTCGCCCCGGACGCTGGTCACGCTGGAGCAGAGCCGCGCCTGTCTCATCCCCATCATCGTGCTGCTGCTGCAGAAG
Seq A exon
GTGCGGCCGGCTGGACGCCCGCCAGGGCCGGTGTAGAGGGAGGCCGGAGAGCGCTCTGAGCATTACTTGCGGGTAGGGGAGAGATGGGTGTGCACCACTCGAGGCGGGGGTGCTGTGCGTGCACTGAGGGGACCACAGACACTGTTCCAAGTACTAGAGAAGTCCCCTGCTCACAGGTGACAAACGGAGATTGAAACTGACAAGCAAAAAGTTTGGATTTCTGTTCAGGTCACCTCTGTCCTGTGGCCACCAGCCTCAGGCCCAGGTGCTCAAAACAAGATAATCAGGAATCTGGCTCCTTTACTTCCTTCTTTTCCCTTCCTTTCTTCCATTTGTCCTAAAATATTTCAAACCTGGAGAAAATCGGGCAGAATGGTGTACTAAATTCCCACACTCTGACTGCCCTGCCTTATGACCCCTGTGGTTTTGTGTAGACACCTCACCTTCATTCCCATTATTTTGAATCAAGTCATTTAGTTTATAATCATTTCAGTATGCCTTTCCAAAGGATAAGGACTCTCCCACCTCTTCTCATAACATTTTACTTAAACATTTCAAACCTATAGAAACTGGAAAGATTCGTACAATGTACCATTCACCTGGATAGCTACAGTTATGTGTTTTCACCCACTGCTCCATCTCTGTCTGTCTTCATCTCTCTCCACATCCACATACAGATACCCATATATTTGTATTTTTTCCCTAGCCACATAAAGTAATGACCTCTAAATCCTTCATCAGGTGTGTATTCTGAGAACAAGGACATTCCCCTTTATAATCACACCGACATTAGCCCATTCAAGAAAACTAACACTGATAAAATATAACCTACATAGCTGAATATCTAACATGTAGGCCGTATTCAAATTTCTGAAAGAAATTTGAATGGGTCCCACTATGACCCGTTATGTCTTTTAAAAACCCAGAATCCAATGAATGATGACACATTGCATTTTGTTGTTACTTCTGATATCTCCTCTAACACACAGGGTTATTTTTAAGAACATGACACAATACCACACCATCCCAGAAATAGGATTTAGAAAGTTGTTACTGACTTCCTGTGTCCCGTCCAGTCAGTCACCACATGTCCCCAATCATATCCTCAGTCTGTTCAAGTCAGGTTTTAATCTGTGAGTTCACTGGGCTGCTTACCTTGTAGGGTCTCCAGTCTGGGTTTGATGGTCACATTCTCAGGGTACCCCTCCAATTTGGGGTCTCCCCATATGAGGGAGGGACTTCCCTGGTGGATTAGATGGTAAAGAATCCACCTGCAATGTGGGATACCTGGGTTTAATCCCTGGGTTGGGAAGATACCCTGGAGAAGGGCATGGCAACCCACTCCAGTATTCTTGCCTAGAGAATCCCCATGGACAGAGGAGCTTTGAGGGCTACAGTCCATAGGGTCACAAAGACTGGGGCACGACTGAGAGACTAAGCACAGCACAGCAGCACATGTGAGGGAGGTGGGGCCTGGCACGGCCTGACGGAGCACCACCTCCTACCGGCTCCCCAG
Seq C2 exon
GCATGGCGGGGCACGCTGGCCAGGAGGCGCTGCCGGCGACTGAGGGCCATCTACACCATCATGCGCTGCTTCCGGAGGCACAAGGTGCGTGCTCACCTGACAGAGCTGCAGCGGCGATTCCAGGCTGCGCGGCAGCCCCCGCACTATGGCCGTGACCTCGTCTGGCCCCCACCACCCACCGTGCTGCAGCCTTTCCAGGACATCTGCCAGGCCCTCTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006377:ENSBTAT00000008366:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(6.5=62.9),PF0061222=IQ=PU(31.6=8.6)
A:
NA
C2:
PF0061222=IQ=PD(57.9=14.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTACACGTGGCCGAATC
R:
AGACGAGGTCACGGCCATAG
Band lengths:
357-1873
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]