RnoINT0097144 @ rn6
Intron Retention
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86784865-86785921:-
Coord C1 exon
chr14:86785714-86785921
Coord A exon
chr14:86785089-86785713
Coord C2 exon
chr14:86784865-86785088
Length
625 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
3' ss Seq
ATTCCCTGTGTTCCATCTAGGCT
3' ss Score
9.63
Exon sequences
Seq C1 exon
GTACAAGATGACCTGTGAGTACACATGGCCCAACCACCTGCTGGGCTCTGACAGGGAGGCGGTGAGCGCCCTTCTGGAGCAGCATGGGCTACAAGGGGATGTGGCCTTTGGTCACAGCAAGCTGTTCATCCGATCCCCAAGGACGCTGGTCACTCTGGAGCAGAGCCGAGCTCACCTGATTCCTATCATTGTGTTACTGCTGCAGAAG
Seq A exon
GTGCGAGGAGAGGGTGGGGACAGGTGTTCACACAGATCGTGCAGAATGTGCCTCTCCTCTCCCACTCCTGATGGTGTTCCTGATATTTTGAAGTCACGTGTGGGTCCCTGGCTATTTGCTTTGTAGGATGTTCCTGACGGTCACATTCTGGGGATGTCCCTCTGTCTCCAGGAGCCATGGAGAAAATCTCTATCCCCTCTCTCCTCTCTCCCACACAAGCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCACACAAGCTTTCTTCCCAGGGCATCTACAAGTGCCAGCCTGGGATAGATGAGCTCCTCTTTTCTGAGAGACTACAGACTACTGAGCAGTTTGTCTGTCCTTCAGGGCCATATGCCTACCCAAGAACAAGCCTCTGGACAGAATTGGCTCTAAAGAGCAGAAGGCATGATAGCCAGCCTTCCGGGAGACAAGACTCAGGAAAGATCAAGGGCCAACCTAGAATCAGGAGGCTAGCGCCTTGCTAGTGATGACCCCGTGTCTATTCCCTGTGTTCCATCTAG
Seq C2 exon
GCTTGGCGGGGCACCCTGGCCAGGTGGCGCTGCAGGCGACTGAGGGCCATCTACACCATCATGGGCTGGTTCCGGAGGCACAAAGTACGCGCTCACCTGATTGAACTACAGCGACGGTTCCAGGCTGCACGGCAGCCCCCACTCTATGGCCGTGACCTTGTGTGGCCAACACCACCCGCTGTGCTGCAGCCGTTCCAGGATACTTGCCATATTCTCTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140:ENSRNOT00000092021:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(6.4=62.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTACACATGGCCCAACC
R:
ACAAGGTCACGGCCATAGAGT
Band lengths:
355-980
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]