GgaINT0097035 @ galGal3
Intron Retention
Gene
ENSGALG00000005644 | MYO1G
Description
NA
Coordinates
chr2:3961445-3962379:+
Coord C1 exon
chr2:3961445-3961652
Coord A exon
chr2:3961653-3962155
Coord C2 exon
chr2:3962156-3962379
Length
503 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TGACTGCTGATGTCTTGCAGGCT
3' ss Score
8.42
Exon sequences
Seq C1 exon
GTACAAGATGACGTGTGAATACACATGGCCCAACCACCTGATGGCCACTGACCGTGAGGCCACGCAGACCCTCCTGGAGCAGCATGGCTTTCAGGACGATGTGGCTTATGGCCACACCAAAGTCTTCATCCGCACGCCCCGCACGCTCTTCTGCCTTGAGCAGGAGCGGGCGCAGCTCATCCCCATTATTGTCCTGCTGCTGCAGAAG
Seq A exon
GTGGGTGCCATAGGTTTCAGGCCCAACCAGGCTGTGACAGGGCTCAGTAGAGGAGAGTGGGGGCAGCAGGGTGCTGTGGTCATGGTGTGGGGACTGGCATGGGGCTGGGAACGGGGCCACACAATGGGGCATAGCGTGGTGCAGAGCATGGGCATGGCATGGGCAAAGCACTGCCTGGGACATGGCATAGGGGTGACATGAGGATGGTGTTGGGCATGGCATGGGAGTGACATGAGGGTGTCTTGGGGTCTGATGTGATGGTGACATAGGGCATGGCATGAGTGTGACATGGGGGTGACATGAGGCATGGCACAGATGTGACCACATGGGTGCAGAATTTGAACCCAGGGCACCACTTGGGTTGTTTCTTCAGATCAAGGCATGGACCCAGAGCAGGGTGTAGAGGAGGACATGGAGGGAATGGGGCACACAGCCAGTCTCACCAGCTCATTTTGGGGCAGGGTCAGCATTTTGGGGGTCATATGACTGCTGATGTCTTGCAG
Seq C2 exon
GCTTGGCGTGGAGCCCTGGCCCGGCGGTGGTGCCGGTACCTGCGTGCCGCCTATGCCATCATGGGCTACTACAAGCGGCACAAGGTGAAGGCATACCTGCTGGAGCTGATACGGCGCTTCCAGGGTGTGCGCTCCATGCCCGACTTTGGCAAGAGCCTGGCATGGCCAGAGCCGCCGGCTGTGCTGAGCCGCTTCCAGGAGAACAGCCAGCAGCTCTTCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644:ENSGALT00000009051:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(13.3=62.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATGGCTTTCAGGACGAT
R:
CTGCTGGCTGTTCTCCTGGAA
Band lengths:
342-845
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]