HsaINT0108637 @ hg38
Intron Retention
Gene
ENSG00000136286 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr7:44965637-44966280:-
Coord C1 exon
chr7:44966073-44966280
Coord A exon
chr7:44965861-44966072
Coord C2 exon
chr7:44965637-44965860
Length
212 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATCCCACCTGGCCCACCCAGGCA
3' ss Score
4.52
Exon sequences
Seq C1 exon
GTACAAGATGACCTGTGAATACACATGGCCCAACCACCTGCTGGGCTCCGACAAGGCAGCCGTGAGCGCTCTCCTGGAGCAGCACGGGCTGCAGGGGGACGTGGCCTTTGGCCACAGCAAGCTGTTCATCCGCTCACCCCGGACACTGGTCACACTGGAGCAGAGCCGAGCCCGCCTCATCCCCATCATTGTGCTGCTATTGCAGAAG
Seq A exon
GTGAGGTGGGCGGGGCAGGAAGACATCCACTATGGAGGTGGGGAAAGCTTGTGTCCCAGGGGCCACAAACACACTTGTAAGTTTCACAGGAGTCTCTGCTTGATGGAGACAGGCCAGGGAGTGCTCAATAAATGCTCAGGGCCAGGTTTGGGTCTAAGGGTTAGGGCCTGATTGAATTTGACTGCGTATCCCATCCCACCTGGCCCACCCAG
Seq C2 exon
GCATGGCGGGGCACCTTGGCGAGGTGGCGCTGCCGGAGGCTGAGGGCTATCTACACCATCATGCGCTGGTTCCGGAGACACAAGGTGCGGGCTCACCTGGCTGAGCTGCAGCGGCGATTCCAGGCTGCAAGGCAGCCGCCACTCTACGGGCGTGACCTTGTGTGGCCGCTGCCCCCTGCTGTGCTGCAGCCCTTCCAGGACACCTGCCACGCACTCTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136286:ENST00000258787:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(6.4=62.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTGTTCATCCGCTCACC
R:
AGGTGTCCTGGAAGGGCTG
Band lengths:
296-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development