MmuINT0104279 @ mm9
Intron Retention
Gene
ENSMUSG00000020437 | Myo1g
Description
myosin IG [Source:MGI Symbol;Acc:MGI:1927091]
Coordinates
chr11:6410151-6411078:-
Coord C1 exon
chr11:6410871-6411078
Coord A exon
chr11:6410375-6410870
Coord C2 exon
chr11:6410151-6410374
Length
496 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATTCCATGTGTTCCATCCAGGCT
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTACAAGATGACCTGTGAGTACACGTGGCCCAACCACCTGCTGGGCTCTGACCGGGATGCGGTGAGCGCCCTGCTGGAACAGCATGGGCTGCAAGGGGATGTGGCCTTTGGCCACAGCAAGCTGTTCATCCGATCCCCAAGGACGCTGGTCACTCTGGAGCAGAGCCGAGCTCGCCTGATTCCCATCATTGTGTTATTGCTGCAGAAG
Seq A exon
GTAAGAGGAGAGGGTGCTAAATGGACCCCCGTCACGGTAGGGACCGGTGTCCACACAGATCGTGCAGAATATGCCTCCCCGGTTCCACTCCTGATGGCGTTCCTGATATCTTGAAGCCATGTGTGGGTCCCTGGCTTGTAGGATGTTCAGTCTTAGTTCTGATGATCACACTCTGTCCCTCTGTCTCCAGGAGCCATGGAGAAAATCTCCGTCCCTCTCTCCTCTCTCCCACACAAGCTTTCTCCCTAGGGTGTCTACAAGGCCTGGGGTACATGAGCTCCTCTTTTCTGAGTATTGAGCAGAGTTTGGGGTCCTCGAGTGCTGCATGCCTACCTAAGAGCAAGCCTCCAGACAGACTTGGCTCTAAAGAGCAGAAGACATGGCAGCCAGCCTTCTCTGAGACAAGACTCAGGAAAGACTAAGGGCCATACCTAGACTCAGGAGGCTAGTGTCTTGCTGGTAATGAGCCCATGCCCATTCCATGTGTTCCATCCAG
Seq C2 exon
GCTTGGCGGGGCACCCTGGCTAGGTGGCACTGCCGGCGACTAAGGGCCATCTACACCATCATGCGCTGGTTCCGGAGGCACAAGGTGCGTGCTCACCTGATTGAACTACAGCGCCGGTTCCAGGCTGCACGGCAGCCCCCACTCTATGGCCGTGACCTTGTGTGGCCCACACCTCCTGCTGTGCTGCAGCCCTTCCAGGACACTTGCCGTGTTCTCTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020437-Myo1g:NM_178440:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(6.4=62.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTACACGTGGCCCAAC
R:
ACAAGGTCACGGCCATAGAGT
Band lengths:
355-851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: