DreINT0014967 @ danRer10
Intron Retention
Gene
ENSDARG00000036104 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr19:25121572-25125951:-
Coord C1 exon
chr19:25125744-25125951
Coord A exon
chr19:25121796-25125743
Coord C2 exon
chr19:25121572-25121795
Length
3948 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
GTATGTCTGTTTTTCTGCAGGTT
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTACAAGATGACCTGTGAGTACACGTGGCCTAATCACCTGATGAGCACTGATCAGGAGGCTGTGGAGGCCATAGTGAACCAGCATGGCTTTGAGGATGATGTTGCGTACGGCCTCAACAAAATTTTCGTCAGGACCCCTCGCACACTCTTCACCCTGGAGCAAGAGAGAGCCGCGCTCATCCCCATATTAGTGCTGTTCTTACAGAAG
Seq A exon
GTGACAGACACTCTTTTCACTTCTCTTTATCTGTCTGGCAGTTTCCTGGGGCACTTCAGGTCTCTGTCTGTCAGTGTTGTTTTCTTGTTGTCACTAAGGCTGTACCACTTCTGCCTTCTGTCTTTCCTCTGTTTCATTTTATTGTTTTCTTGCTCTCTGTAGCTGTTTGGCGCAATCATTCTTGACTTGCTTACTTTTTTTTGCGTGTTTAGAGGTGACAAGAATGTGAAGTGGGATCACAACACCTAGACAGCAGGTCTCTATGTACCATTACATCAGTGGGTCTAATTAACATCATACAAACAGAGTTTTGATCTTGCAGACCATAAATCTATTTTTACATTCTTATTTACATGTTTTAATATACTTTTTAGGGGATACACAGTATAAAAAGAGATATCTGTATGTAACATTGATGTAATTTTAGGATGCTGGACAACGGAGTTGACGATCCAAATACAGATTTTATTAAGAGAATGGTCTAGCAAGCAAGGGTCAAAACAAGAACAAACAGGTGTATGCAGAGTAATCCAAAGTGTGCTCGATAAACAGTAGGGATGGCTGACGTGAAACTAATGTTTCGACACTGTCGAGATCCCAAAGCGCAAGTGTTTCAAAACACTGCATGAATCATGATCCGAAGCACCCAGGTCACGTGACTAAAGTGTTTCGAAACACCTGGTCACGTGACTAAAGCAGTTCAAAGCAACAATCAGTTTAGAAGCATTTCAAGACCTGGCGAATCTGCATTTGACTGACATGATCAGAAAAAAACGTTTGTCATATAGCCTAGTGGACCGTGCAAGTGCACATTGTTATTGTGCTTCAAATGACTTTTGGGTTCGAATCCCGACTTGTACAAATACTCCAAAGTCATGCTTTTATGTATTTTAATCATGTTACTATTTTATGGTGTAGTCTAGATAGGATGCAGCTGAGGATACGCCATCAATCTAGCATCATTTTTGGAACACTGTAAAACAATAATTAATATTTTTGCAGTACTGTAATGGTAGGGTTTAGGGTTTGTGTAGACGTTAATAAAATACAATAAATGGGAAATTTAAAGAATAATATAAATAATTCTTGTTAACTTCTGGCCACAACCATGTCTGATCTAGCAACAACCTTGTTTTATGACCAAAACAAGACAAACAATTTTTTTCACATATTGTTTATTCGAATGTCAGACCAGTATTGAAACAAAACAATACAAGAACAGAGCATTACAAAGTGATATTAAAGCATTTCAAAATAGCTGTATCGGCCTGGATTCAAAACCACTATCCCCGCATGGTAGTCAGAAACCTTATCCACACCACTAAATCACTTGAAGGTTAAATCATACAAAGCGGGGTTTAATACCTAAATTTGCTCAACTGTTCTTTGCTGAAGCTGTTCTAGTGCAATACATAAACAATGACCACTAGGTGTCAACGTAGAGTGGGGTTTCGAAACGATTCAAAGTTTCGACACATTTGCTTCGACTGTTTCAGGGTTTCGTAAAGCCTCGCTTTGCCCACCACAACAGGCGACTGGTCGGTACAGGCGGTAAACTACAAACACAGAAACAAAGCAAAGGTCAAACATAGCAAGGCAAGGCAAATGTGTCATAATGTTCACAAATAGTATAACAAGACTCAGCAATGATGTGTGTGTGCTGTGTTTATAGTCCATCTGATTAGTCCTGAGCTGCTTCAGCTGTGTGTGTTTGCTATCAAGGCGGAATCTGAGCCAGGTGTGTGAGTGAAGTGCATGATGACATTTGTAGTTCATTAAAGTGGCAGATTTGTAGTTCTTAAGCGATCTGCACAGGCTGGATCATTGGTGACAGTGACAACTGTATATAAGAACATCTTAAAGGTGCAGTGTGTAGGATTGACAGCTAGTGATTGAACTATGTATTGCGGCCCAAATTCAAAATGTTGGATAGTGTTTTTTCACCCGGACCCTACTCCTTTGGGAGGGCATGCAGGTTGCCAGATTGACAGCACAAACAGGAGCCTGAAAATCGAGCCTGACATTAAAAGCTTGTCAGCTAATGTTTACATTTGTAATATTTTTATTGACAAATAAATAGTCCTATCATGGATTTTTATAATTCTGAATCTGCGTCTTATTTCGAAGGCTGATACTCTCCACCTGAGGACATTGTGTAAACTGGCAGTGGGTGGAGTTACACAGACCAAAGCAAAGATAGATATTCTGACACAGAATTGACTTTTTGAAAAGAGAATAGATTAATGTAGTATTGTTTATCAGATAAACAATATGTTCCCTTGGCATGTTTCTTAAATATCTGCAAGGACATTTTTGTATTTTCTGGTTTATAAGGGTCAAAAACTTAAATACAACACCTTTAAACCAATATTCATCTTTTTATGATGCACAATCATCTATGAATAATTAGAGTGGGCTATAATACATGAGGGTATGGATATATAAATACTAATGTTCTGCTCATTATTTCTTGATTTTCCCACTCATTCATCCAGTGTGTAGGCTGTGTGTGACTCTAATAAGTGTTATTGTGGTAAGGATTAGGATTGTTGAATTATTCTTGTTGCATTTAATTATTTATCTGCAATGAGATTTGCCCTGATTTTACTGCTGACCCACTTAATGCTGCCTAACTTAAACTAGAGAACAACCTAGCCAAAACTCGACAGGGAAACTCTGTAATGCACAGCAGATGAGACCACCCGGCAGCTGACATATATCTGTGCAGATGACCCTGTCTCACTCACTCACTTGATTTCTAGTTCATTCATTACTTCATTCATTTATTCACTCCATCACTTACTCATTTGCTTACTCTCATTTGTATTCTTGATTATTCATTCATTCATTCATTCATTTACTCACACTCTGACTTCCTAATTTTTTTCATTCACTTGTGTTGTCTTTCGTTCGTACATTCACTGTTTAGTCCCTCTCTCTATCTCACTCACTCACTCACTCACTCACTCATTTGATCCTACTTTCTCCCTCTTTCACATTCTCGATCCCTTGATCTCTCATTTGTTCATTCTTTAATTTTTTCATTCATTGACTCACACTCTGACTTCCTTACTCTCTGTTACTAACTTGTGTTGTCTTTCGTTCGTACACTCATTCCCTCCCTCCTTCCCTCCCTCACTCACTCACTCACTTACTCACTCACTCACTCACTTACTCATTCGATCTTTCTTTCTCCCTCTTTCACATTCTCAATCACTTGATCTCTCATTCATTCATTCATTTATTCATTCATTCACTCACACTCTGACTTCTTCAGTTACATGCATATTTAGTCTTTCATTTGCAAACTTACTCTATTGTTTAGTCTCTCATTCCTTTACATTTCCACTCATTCATTCCTTCCTTCCTTCCCTCCTTCCTTTCTTCATTCATGACTGCGTTCAAGCTCATTTTTTTGCCCTTCCCTCTCTAAATTCCTTCCAATTCATTGACTTCTTGATGTATGTCATGATAAAATTACAAGTGCCCTCTACTGACGGAGCGTCTGATAATGATTTAAAGGAATGCCCTAAGACACAGCAAATGCAAGACGATGTTGTAATGTCAAAACTGTGCACTTACCATAATGAAGGGGTTGAGGGGTTATATGTGTAAACTTTCCTCGTCCAGTAGATGAAGTGGATGGAACTTCAAAATGGCAGCAGTAATTCCCGTGTGGGGAGGTGCTTAAGGAAGTTCATGAGTGCGTGTCTAAAAGGAGCGTGCAATTCATCCTGAAAAACTTACTCCAGCTGTGTTTCCCACCCTGCTGTCATTTTCAAGTGCAGTCCACTTCAGCAAATAGATGTGGGAAATATACATTCACAGACTGTTTACCCTTATAATTTGTAGCTCAATTGAACTATTGTTACTACACATTAGTAAAATCTTTGATATTTAAAGAACGATTATGTGATTTCTTCAACTTGTATGTCTGTTTTTCTGCAG
Seq C2 exon
GTTTGGCGAGGTGCATTAGCACGTATGCGATGTCGAAAAATAAGAGCAATTTATACTATAATGGGTTATTATAAATGCTATAAAGTGAAGGCTCACTTCTGGGAAGTGGAGAGACGTTTTGCTAGCGTTCGAAACATGGCAGACTATGGGAAGAGTGTGGAGTGGCCAACACCACCTGCAGCCCTGGCACAGTTCCACAGAATTACACAACACCTGTACCGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036104:ENSDART00000142774:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(6.5=62.9),PF149351=TMEM138=PU(16.2=24.3)
A:
NA
C2:
PF149351=TMEM138=FE(70.5=100),PF076296=DUF1590=WD(100=22.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]