BtaINT0098290 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57402049-57403014:+
Coord C1 exon
chr15:57402049-57402173
Coord A exon
chr15:57402174-57402856
Coord C2 exon
chr15:57402857-57403014
Length
683 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
CAACTGTCTGTGCTCTGCAGGCC
3' ss Score
8.82
Exon sequences
Seq C1 exon
GCCCTGGTCACCATGACCCCCGACCAGAGGCAGGATGTTATCCGACTCCTGCAGCTGCGAACGGCAGAGCCCGAGGCGCGCACCAAGCCCTACACACTGGAGGAGTTTTCCTACGACTACTTCAG
Seq A exon
GTGATGGGGAAAGGGAGACAGGCGAGGAACTACAGGCTTCTGCTACTCTCTGGTCTGCGTAGTGGGGTCACATTGTGGTGCCCCCATCTGTGAGAAGGGCCTGGTCAGAGGGAGCCAGAGGGCAGTTTCAGTCTATCGAGGTGACCCTTCTCATGTTGTGTCATCTTATCCTTCCTTCATTTGAGATCCTGTGGCTATGCTGCCCTAGGTGGAGTCCTGGGCACTCAGGACGTGAGCCTGTTCTTGCCTCATGGACTCAGTCCTGGTGGGGAGGCAGGCGTGAAACCAGGCAGCTGTTGTCCTGTGTGCCTGGTGTTGTGATGGAGATGCTGGGTAGGGGTGGAGATGGAGAGGAGGCTTCCTGGGGCAAGTGGTGTCTGGGCTGCTGGGTGGAGGAGTGCCATGGGCAGTGCATGCCATGGCCTGAGCAGAGGGAGCAGAGAGGAGCCAGGGCGAGCAGGCTGGGGAGGTAGGCAGGGCTGGCCGGGGCCCAGCCAGCCTTGTTAGTGTCTCTATTTGTCAGCTGAGAAAGTAAGGCCTGGGCAGAGCTGGTGACTCATCCCTGGTCACAGGGGACAGCAGGGAAGTGCAGGGCCGGTTCCCTATGCTCAGCCTCCTGCACGGGGTGGGATGGGGCTGGAGTTATAACCTGGCCGTCGGTGCCAACTGTCTGTGCTCTGCAG
Seq C2 exon
GCCCCCACCCAAGCACACACTGAGCCGCGTCATGGTGTCCAAGGCCCGCGGCAAGGACCGGCTGTGGAGCCACACGCGGGAGCCGCTCAAGCAGGCCCTGCTCAAGAAGATCCTGGGCAGCGAGGAGCTCTCACAGGAGGCCTGCATGGCCTTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGACCCCCGACCAGAGG
R:
CAGTGAAGGCCATGCAGG
Band lengths:
272-955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development