MmuINT0104570 @ mm9
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105212098-105212747:-
Coord C1 exon
chr7:105212623-105212747
Coord A exon
chr7:105212256-105212622
Coord C2 exon
chr7:105212098-105212255
Length
367 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACG
5' ss Score
7.66
3' ss Seq
ACCATCTCCGTGCCTGACAGGCC
3' ss Score
9.16
Exon sequences
Seq C1 exon
GCCCTGGTCACTATGACCCCAGACCAGAGGCAGGATGTCGTCCGGCTCCTGCAGCTTCGCACAGCAGAGCCAGAGGTGCGCGCCAAGCCCTACACGCTAGAGGAGTTCTCCTACGACTACTTCAG
Seq A exon
GTGACGTCGGGTGGCAGGTTGGGGACAAGAATGGTGCTCTTTGAGATGCCCCCACCTGAGAGCGGGGCCAGCTCAGGGGCAGCATAAGCAGTTTCTGTTGTCCAGGATGAGCCCTCTGTGTAGTCCCATCTCATCCTTTCTTCCTCTGGGTGGTATCTGTGCCACTCATCAGGTCCTCTGCCCTGGGGGACAGGGGCTGGGCAGGACGATAGATGCTGTGGTTTGGGGTGCTCAGCTCTGCCTGAGGGTACCTGGGAGCAGAGCAGAGGCTTCTGGAGAAGGTGGCATGTGTGTGCATTGCACAGCATGGCAGGAGGGGCTCGCTTCCTGTGGTGGGGCAGGTACTGACCATCTCCGTGCCTGACAG
Seq C2 exon
GCCCCCACCCAAGCACACGCTGAGCCGTGTCATGGTGTCCAAGGCCCGCGGTAAGGACAGGCTGTGGAGCCACACACGAGAGCCCCTCAAGCAGGCCCTGCTCAAGAAGATCCTGGGCAGTGAAGAACTCTCCCAGGAAGCCTGCATGGCCTTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-Myo7a:NM_008663:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTATGACCCCAGACCAGA
R:
AGGCTTCCTGGGAGAGTTCTT
Band lengths:
262-629
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: