DreINT0101091 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22260480-22261160:+
Coord C1 exon
chr21:22260480-22260604
Coord A exon
chr21:22260605-22261006
Coord C2 exon
chr21:22261007-22261160
Length
402 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTA
5' ss Score
2.93
3' ss Seq
GGTTGCTTTCCATCCTCTAGACC
3' ss Score
7.69
Exon sequences
Seq C1 exon
TCATTGATCATCATGTCTCCAGACCAGCGTAAGGACTCTGTAAATTTGTCCCAGCAGAATCTGCTGGACAGTGGGGAGAAAGTCCAGCCGTACACTTTAGAGGAGTTCTCCTACGATCACTTCAG
Seq A exon
GTGCTATGACCCACTTCGAGACCTTTCAAAGGGCTTTATTGTGTCCTAAATTCTTTTTATTCTAATTATTATATTTTAACATTTAAATATGAATTATGAAATATGATTTATAGTTAAATATGCTATACATACTTAATATTACTATAGTTATATTCTCTTGTTTCAAAAAATTCTAAATTTTCGGCATAAGTTGAAATTTTCCGAATTAAAACAAAAAAAATTACAGCAGAATGCTACACATTTTTGAATAAAGGAATTAGCAAACAATAAAGAACAAGTCAATATTCTACATATTTTTCCCATGCACCTGCAAAAAAATGTTTGTGAGTGTGTGTTCATGCAAAAAGCTATTTCTGTTATACTGTATATTTTACATTATCTTGGTTGCTTTCCATCCTCTAG
Seq C2 exon
ACCACCTTCCAAGAGCACCCTGAGCCGCGTGATCATCAATAAAGGTAGAGGGAAGGATAAAATCTGGTGCTGCACCAGAGAACCTCTGAAACAGCCTCTGCTGAAAAAAATCCTCAGTCATGAAGAGCTGAGCCAGGACGCCTGCCAGGCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGATCATCATGTCTCCAGACCA
R:
TCCTGGCTCAGCTCTTCATGA
Band lengths:
262-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]