GgaINT0104541 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198113809-198114780:-
Coord C1 exon
chr1:198114656-198114780
Coord A exon
chr1:198113967-198114655
Coord C2 exon
chr1:198113809-198113966
Length
689 bp
Sequences
Splice sites
5' ss Seq
TAGGTGATT
5' ss Score
4.02
3' ss Seq
TTCTTTGCCTTTGCCACCAGGCC
3' ss Score
9.49
Exon sequences
Seq C1 exon
GCACTGGTTACAATGACCCCTGACCAACGACAGGATGTTATCAGAACCTCCCAGATGGCAATTTCAGACAGCGAAGAGAGAGTGAAGCCATACACCTTGGAGGAATTTTCCTATGATTATTTTAG
Seq A exon
GTGATTTTTTTCAACCATCTTCAAAAAATACAGGAGTAGAAATCCATCTCCACATAGCTTGGGAATAAGTAATTTTTTGGCTACTGGAAAAGATTGTAACTATCTTATCCTCTTGTGAGACTGTACAACAACAACTTCCAGTTTAGGCCATAGCATGAGTTATAAGTGTTCCACACACAGGGTTTTATGGATTAGGTGGAGACATTTTCACCTCAGCTCCAAAGCATACCCCATGGCTGCATGTAGCCTACCAGACTGACCCCATAACTGCCCTTTCTGCTCAGAGGGGCTGGCAGTCTAAAGAGGCAGAACAAGTCCTCTGGAATATCTTCATCCTGGTGGGCTTGTTCTACCAGGCAATATTCTTTCATCATTGCTGCCCATCTCCCCACTGTCATCATCTTTCCTCTTGTAATTAGAAAGGTGTTGTTTTTTTTGTTAGAAAAGTTTGTTTGAGTATCAGTGCTTAAGTAGGGTCCAAAACAGACTTTTCTGAGCCCTAGAAAAGTCAGAATGGCTATGGTTTGGGTACAACTGGAGCTGTATACTTGCTAAAATGTAAATTCCCATTTGGTTTAAGAGTTCATTCAGGTGTTGTGAACAACCTTCCAGGTGAAACTCAGGCCACACACAGTCCCTTTCATCCGTGTAACCTCTCCACTATTACTTTTCTTTGCCTTTGCCACCAG
Seq C2 exon
GCCTCCCCCTAAGCACACCCTGAGCAGAGTTATGATCACCAAGAGCCGTGGAAAGGACAAGCTGTGGTGTTACACCCGGGAGCCCATCAAGCAGCCCCTGCTGAAGAAGATCCTGGGTAGCGAGGAGCTGTCCCAGGAAGCTTGCATGGCCTTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGTTACAATGACCCCT
R:
ATGAAGGCCATGCAAGCTTCC
Band lengths:
281-970
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]