DreINT0101046 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3164048-3166744:+
Coord C1 exon
chr18:3164048-3164175
Coord A exon
chr18:3164176-3166586
Coord C2 exon
chr18:3166587-3166744
Length
2411 bp
Sequences
Splice sites
5' ss Seq
CCGGTCAGC
5' ss Score
4.61
3' ss Seq
CCGTGTGTTTTGTCCTGCAGGCC
3' ss Score
11.86
Exon sequences
Seq C1 exon
GCTTTTGTCACGATGACCCCAGATCAGCGTCAGGAGTCGCTCCGCATCTCACACGTCCCAGCACTGACTGAGACGGAGGAGAGGGTAAAGCCCTACACGCTGGAGGAGTTCTCCTACGACTACTTCCG
Seq A exon
GTCAGCACAAATTACTTTTAAAAATGAAATAACGATCAATTTTTACATATTTAAAATGTCATTTTTTTAATTATTATTTATTTATAATTTTTTCTATTTGGTCGAATAACTGTTTTTATTTAGATTTTTGCATACTTTATATTATTTAACATAAAGACTGCGTCAATCATGGCAAGCTATGGAAATGTCTGAAGCAGATGGGCATCCCGCAGCATTTAATAGATCTGACACTCAAAAGGCCACGGTCAGGACGGCATTCGGCAACACTGACTGGTTTGGGATTGAGAAAGGTGTTCGACAAGGATGCATTTTATCGTCTACCCTGTTCAATCTGTATGCCGAAGTGGTCATGGGGCTATGCAATCTGGCCAATTACCAATCGGAGTGAAGATCAGCGGGAGAAACATCAACAACCTTTGTTATGCCGATGATACGACCCTGATTGCAGAAAGTGAAAAGGACCTCAAATATCTGGTCTGAAGAGTGAAAGAAGAAAGTGAACGCATGGTACTGTACCTCAACATCAAGAAAACAAAGTTAATGACAACAGCAAGCAATGGTACAGTCCACATAACAATTGACAATGAGGAAATCGAATCAGTCCAAGACTTCATCTTCCTTGGATCCAAGATCAACCACAATGGCGAGTCAGGGCCGGAGATCAGAGGAAGAATCGCACTTGGCCGCAGTGCAATGCAAGGAATGGAGAAGTTATGGAAAAGCAAGGACATCAGCATTGTAACAAAGATCAGAGTAATCAATGCCATCGTTTTCCCACTCTCCATGTATGCATGTGAGAGCTGGATACTCAAGAAGAAAGACAGAAGGAAGATCGATGCTTTCGAATTGTGGTGCTGGAGGCGAATGATGCGCATACCATGGAGGGCGAGAATCACAAACAAAACGATCCTGCAGCGTGTCAAACAAAATGTATCGCTAGAGGGCAAAATCACCAAGCAGAGGATCTCGTTCTTTGGTCATATCATGCGAGCCAACTCCATGGAAACAGCTTTAATGCTCGGTGCAGTCAGTGGATCGAGAAGAAGAGGGCATCAAAGAACAATCAAGACTGACACGATCTTGAACATGGAACAACTGAAAGAAGCAGTCAGAAATAGGAAAGTGTGGCAAATCACGATCCATAAAGTGGCCGAAAGTCGGTATCTACTGGTTGGCTAATTATCATCATCATCATCATCATCATAATAATATTATTTAAAATATAACATTTATATTGTTTTTATAATATTATTTTACATTATTATTTTATGCTGAAAAAAATAGGCTGTTTTCTTTTGGCAGAATATAATTGTTTCTTTCTTAAATTTAGGCAGATTTTTTGGATCTGGACCATAAAATATGCTTCTTTCTTTGTCCCATATTTATTTATTTATTACAAAATATATATTATTTTATTACAAAAAGAGTTTATTTAACTCCCATGTCAACTTAAAATCAAATAAAAATTATATTGTAATATAACAATTTATGTGAATTAAGTAAATTAAACATCATCTGTGATATTACTCAAACAAGAATGCAAGGAGATATAGTTTTCTTGACATTTTAACAGGTTATGTTGAAATCCTAATTTTTCACTAGTTCTGTTTATTTATTTATTTTATTATAAATGGTTTGGTCACACTGTACAATAAGGTTTCATTAGGAAATGATAGTTAATGTTAAGTATAACCAATGCTTGTACGGCATTTATAAATATTGATATCAACATTTACTAATGCTTTATTAAAATACAAAGTTTTGCTTCTTAGCATTAGTTAATCCACCGTGAGTTAACAAACTAACATTGAAACTGTATTTTCTTTAACTAGAACATTTTTGCTAACTAGAACAAATACTGCAATAAATGTATTGTTCGGTGTTTGTTCATGTTAGTAAATGCATTAACTAACATTAACCAACACAACCTTGTTGTCAAGTGTTACCAATGGTTTTATTGTGCTCGATTCATCAATGCATGATGTTTTGAAGTAAAAACATTTTAACTTTACATTAAAATCGAAGAACATGTCGGCGCAATAGCCTAGAGCACAGGTGTCAAACTCGGTTCCAAAAGGGCCGCAGCTCTGCACAGTTTAGTTCCAACCCTAATTAAACACACCTGATCAAACTAATTGAGTCCTTCAGGATTGTTTGAAACCTTTGTGCAGGGCTTTGGCCCTCCAGGAATTGAGTTTGACACCCCTGGCCTAGAGGTTAGCGTGCCGAAATATTATGCAGTAGCATGTTAGGGTGTCCTGAGTTCGAATCCCAGCTCGAGGACATTTCCCTACACCCCTCTCTCTCTCCCACTTCGCTTCCTGTCTCAATACTGTCCTATCTAATAAAGGCAAAAAAAAAATCGAAGAACATGATTAATAAGCAGAGCTGCCGTGTGTTTTGTCCTGCAG
Seq C2 exon
GCCTCCTCCTAAACACACTCTGAGTCGAGTGATGATCACCAAGAACCGAGGGAAGGATAAACTGTGGTGCTGCACTCGAGAGCCCATCAAACAGGCGCTGCTGAAGAAGTGTGGGGGACACGAGGAGCTCTCACAGGAGGCTTGCATGGCTTTCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.221 A=NA C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]