RnoINT0097395 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163013160-163013817:-
Coord C1 exon
chr1:163013693-163013817
Coord A exon
chr1:163013318-163013692
Coord C2 exon
chr1:163013160-163013317
Length
375 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
ACCATCTCTGTGCCTGACAGGTC
3' ss Score
10.97
Exon sequences
Seq C1 exon
GCCCTGGTCACTATGACCCCAGACCAGAGGCAGGATGTTGTCCGGCTTCTGCAGCTGCGCACAGCAGAGCCAGAGGTGCGCACCAAGCCCTACACGCTGGAGGAGTTCTCCTATGACTACTTCAG
Seq A exon
GTGATGTCAGGTTGGGGACCAGGATGGTGCATTTTGTGATGTCCCCACCTGTGAGCGGGGCCAGCTCAGGGGAAGCAAAGCAGTTTCTGTTGTCCGGGATGAGCCTCCTGTGTGGTCTCATCTATCCTTTCTTCCTCTGGGTGGCACATGTGCCCCCCCACAGCAGATCCTCCACCCTGGGGGGAGGGGCTGGGCAGGAAGATAGATGCTGTGATTTGGGGTGCTCAGCTCTTCCTGAGGGTGCCTGGGAGCAGGGCGGAGGTTCCCGGAGAAAGTGGCATGTGTGTGCATTGCAAAGCACGGCAGGAAGAGCAGGACGGGGAGGGGCTCACGTCCTGTGATGGGGCAGGTACTGACCATCTCTGTGCCTGACAG
Seq C2 exon
GTCCCCACCCAAGCACACGCTGAGCCGTGTCATGGTGTCCAAGGCCCGAGGGAAGGACCGACTGTGGAGTCACACACGAGAGCCCCTCAAGCAGGCCCTGCTCAAGAAGATCGTGGGCAGCGAGGAACTCTCCCAGGAAGCCTGCATGTCCTTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGACCCCAGACCAGAGGC
R:
ATGAAGGACATGCAGGCTTCC
Band lengths:
271-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]