BtaINT0098325 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4846970-4847472:-
Coord C1 exon
chr2:4847272-4847472
Coord A exon
chr2:4847138-4847271
Coord C2 exon
chr2:4846970-4847137
Length
134 bp
Sequences
Splice sites
5' ss Seq
TCGGTGCCT
5' ss Score
1.03
3' ss Seq
CTCTGTCTCCGTTTTCCCAGGCT
3' ss Score
8.67
Exon sequences
Seq C1 exon
GATCTGAAGGAGATGACCCAGAAGCTGCCTGAGGTTGACCTAGACACGGTCCCCATGATGGAGGAGCCTGAGGATGACCTGGCTGAGTACACCTTTCCCAAGTTCGCTGTGACCTACTTCCAGAAATCAGCCAGCCACACACACATCCGGCGGCCCCTCCGATACCCTCTGCTCTACCACGAGGATGACACTGACTACTCG
Seq A exon
GTGCCTGGTCCCGTGCTTTCTAGTGGCTCAGGCCTCCCGCTGACTCTGCGGGAGCAACAAAGGGGCAGGATGCTGTGGGCTCTGTGCTGCATGGAGCTGGGTTCCAAGCGGGGGCTCTGTCTCCGTTTTCCCAG
Seq C2 exon
GCTGCCCTGGCTATATGGAGCATCATCCTGCGGTTCATGGGCGACCTTCCGGAGCCAGTGCTCTTCACCAGGAACACCCTGCGTGGCGGCTCAGTGATGCGGCAGATCCACGACGCCCTGGGCAAGGAGGGCAGCACCCAGCCTCCACAACACAGCAGATCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.388 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGAAATCAGCCAGCCAC
R:
GCTGATCTGCTGTGTTGTGGA
Band lengths:
248-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]