HsaINT0108964 @ hg38
Intron Retention
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:127609506-127610016:+
Coord C1 exon
chr2:127609506-127609715
Coord A exon
chr2:127609716-127609848
Coord C2 exon
chr2:127609849-127610016
Length
133 bp
Sequences
Splice sites
5' ss Seq
TTGGTACCA
5' ss Score
-0.17
3' ss Seq
CTTCTGTCTTGTTTCCCCAGGCC
3' ss Score
11.88
Exon sequences
Seq C1 exon
GATCTGGAATCGAAGACCCAGAAGCTGCTTGAGGTTGACCTGGACACAGTCCCCATGGCGGAGGAGCCTGAGGAGGATGTGGATGGCCTGGCCGAGTACACCTTCCCCAAGTTTGCTGTGACTTACTTCCAGAAATCAGCCAGCCACACACACATCCGGCGGCCCCTCCGATACCCGTTGCTTTACCACGAAGATGACACTGACTGCTTG
Seq A exon
GTACCAGGGTTCACTGGCTTCTAGTGGATCAGGCCAGCCCCGAGCCTGGGGTGTGAGCTATGGCTCGGGGAAAGAAGGAAGGGGCCATAGTCACTGATGGGTTCCCACTGGGCCTTCTGTCTTGTTTCCCCAG
Seq C2 exon
GCCGCCCTGGTCATATGGAACGTCATCCTGAGGTTCATGGGTGATCTCCCAGAGCCAGTGCTGTATGCCAGGAGCAGCCAGCAGGGCAGCTCAGTGATGCGGCAGATCCATGACACGCTGGGCAGGGAGCACGGTGCCCAGGTTCCACAGCACAGTAGATCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994:ENST00000409816:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=NA C2=0.307
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGAAATCAGCCAGCCAC
R:
CTACTGTGCTGTGGAACCTGG
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development