MmuINT0104603 @ mm9
Intron Retention
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32142877-32143392:-
Coord C1 exon
chr18:32143183-32143392
Coord A exon
chr18:32143036-32143182
Coord C2 exon
chr18:32142877-32143035
Length
147 bp
Sequences
Splice sites
5' ss Seq
TCGGTACCC
5' ss Score
3.81
3' ss Seq
CCTTCTGTCTCATTCCCCAGGCT
3' ss Score
11.49
Exon sequences
Seq C1 exon
GATCTGGAAGTAAAGACCCAGAAACTTCATGAGGTTGATCTGGATACAGTGCCCATGATGGCGATGCCAGAAGAGGAGGTGGACAGCCTGGCTGAGTATACCTTCCCCAAGTTTGCTGTGACTTACTTCCAGAAGTCAGCCAGCCACACCCACATCCAGAAGCCCCTTCGATACCCACTCCTCTACCATGAAAATGACACTGACCACTCG
Seq A exon
GTACCCGCTTTTCCCTGGTTTCTATGTGGCCCAGCCTGCACCCCTCCCCCTGCCCCCGACCCATTGTTCAGAGAAAATAAGCAAAGAGCCCAGATCACCATGGGGCCCAGTGCCAGAACCAACCAGCCCTTCTGTCTCATTCCCCAG
Seq C2 exon
GCTGCTCTAGATGTTTGGATTATCATCCTGAGGTTCATGGGTGACCTTCCAGAGCCAGTGGTCTATGGCAGGAACAGCCTGACTGGCAGCTCAGTGATGCGGCAGATCCATGACAAACTGGGCAAGGACAGTGTCACTCAGCACAACAGATCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-Myo7b:NM_032394:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCCCCAAGTTTGCTGTG
R:
CACTGTCCTTGCCCAGTTTGT
Band lengths:
244-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: