DreINT0014996 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28087932-28088420:+
Coord C1 exon
chr6:28087932-28088141
Coord A exon
chr6:28088142-28088252
Coord C2 exon
chr6:28088253-28088420
Length
111 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
3' ss Seq
TCATGTTGTCTTTACTCCAGGCT
3' ss Score
7.29
Exon sequences
Seq C1 exon
GACTTGGAGGGCAAGCGGACGGTGCTTGAGGAGGTGGATTTGGATGATGCTCCAATGATGCCCATTCCAGAGGAAGACTATGATGATTTGGATGAGTACTCCTTCTCCAAGTTTGCTTCCATGTATTTCCAGGGCGCTGCCACACCAACACACATTCGTCAGAGATTACGCCAACCTCTGCTCTACCATGAGGACGAAAATGATGTCCTG
Seq A exon
GTAAAGCCCTCTTTAACTTGCATGTCTACATTTATAGTATAGTACTTGGTTATCTAGTATTGCTTTTCTTGACACAAACTCTTCTATGCTGTCATGTTGTCTTTACTCCAG
Seq C2 exon
GCTTCATTAACAGTTTGGTGGATGATCTTGAGATTTATGGGTGATCTTCCTGAACCGAAAGCTCAGGTGGTCTCAAGAAGTGGAACAGCCTTTGCCGATCGCTCTGTGCAGAAAGATGTGGCTTCCAGACAGGACAGACGCCTTAGCCATATGGTTGGCGTGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.536
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAATGATGCCCATTCCA
R:
GGCAAAGGCTGTTCCACTTCT
Band lengths:
258-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]