RnoINT0097428 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24769342-24769853:-
Coord C1 exon
chr18:24769644-24769853
Coord A exon
chr18:24769510-24769643
Coord C2 exon
chr18:24769342-24769509
Length
134 bp
Sequences
Splice sites
5' ss Seq
TCGGTACCA
5' ss Score
2.84
3' ss Seq
CTTTCTGTCTCATTCCCCAGGCA
3' ss Score
12.15
Exon sequences
Seq C1 exon
GATTTGGAAGTAAAGACCCAGAAACTTCATGAGGTTGATCTGGACACAGTGCCCATGACGGAGATGCCAGGAGAGGATGTGGATGGTCTGGCTGAGTATACCTTCCCCAAGTTTGCTGTAACTTACTTCCAGAAATCAGCCAGTCACACCCACATCCAGAAGCCCCTTCGATACCCACTCCTCTACCATGAAAATGACACTGACCACTCG
Seq A exon
GTACCAGCTTTTCCCCGGTTTCTGTGTGGCCTATCCTGCACCCCCACCCATTGTTCAGAGAAAACAAGCAAAGAGCCCAGATTACCATAGGTCCCATTGCCTGAACCAACCGGTCTTTCTGTCTCATTCCCCAG
Seq C2 exon
GCAGCTCTGGCTGTTTGGATCATCATCCTGAGGTTCATGGGTGACCTTCCAGAACCACAGGCCTATGGCAGGAGCAGCCTGACTGGCAGCTCAGTTATGCGGCAGATCCATGACAGGCTGGACAAGGACAGTGTCACTCAGGGTCCACAGCACAACAGATCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=0.393
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGAGGATGTGGATGGT
R:
ATCTGCCGCATAACTGAGCTG
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]