GgaINT0031412 @ galGal4
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:856959-857967:+
Coord C1 exon
chr9:856959-857168
Coord A exon
chr9:857169-857808
Coord C2 exon
chr9:857809-857967
Length
640 bp
Sequences
Splice sites
5' ss Seq
CTGGTATCT
5' ss Score
2.7
3' ss Seq
TGTGTTTCCTGTCTCTGCAGGCT
3' ss Score
11.82
Exon sequences
Seq C1 exon
GATTTGGAAACAAAGCCCAGCAAGCTGGAAGAGGTGGACCTGGACATGATTCCTATGAGCGTGGAGCTAGAAGAGGAAGCAGATGGCTTGGAAGACTACACCTTCCCGAAGTTTGCAGCTACTTATTTCCAGGGGTCATCTACACATACACACATCCGGAAACCCCTGCGGCACCCATTACTCTACCATGACGACAAGGACAATGTCCTG
Seq A exon
GTATCTTGCTCCTTGTTGATAAACCTGCTCCCCTCACCTCAGGCACAGCGCTAGGAGCCAGAGACTTTAGAGCCAAGCAGATACTCCCAATCACTTGTATGAAAGTAGTTGTTCACATCAGCATTTTGTGGTGCTTTGCAAGCAGGCATTTCACATAGATACCTGCCTAGCACAAGATCTTTGGTCACCTTTAGTCTGATGACAGAGAGCACTCTGAGGCTTATTTTGACTTCTTCAGATACCCTCTGAGGACAAAAGTGGACTGGACAAAGGAAGCATCAGAGCTCGCCTAACTCTCTACTCTTGTGAGGGTTGCTGCTCTGTGAGCTAGAACAGGAGTGGACAGGCAACCCGGGCCTGCAGATTTTCCTGTTGAATCACAGAAGGGTGAAGAAGGGGAGTTTTTCTTGATGCTAAGCAGCCTTGTAGAATGCTGCAAAAAACTGCATATCTGATGTTCCCACTAGAGCTGCACCCTCTTCCTGAGAGTGTTGTGAATGTTGCTCACGTGGTTGGACAAGAGAGTAAATTTCAGGTGTGAATGGCAGGAGACAGGGATTAACAGCTTGAAAGAAGGAAGAAATAGCATGAGGCATTTTGTGCACTTGGCAGTGTCTGACTGTGTTTCCTGTCTCTGCAG
Seq C2 exon
GCTTCTCTAGTTGTGTGGGTTATCATCCTGAGATTCATGGGGGACCTACCAGAGCCAACAATGTTTGCCAAGAACGCCAAGAGCGGTTCTATGATGACACAGATATATGACACACTTGGCAGAAAAAACCAAGTCCAGTTCAAGAACAGCCCAGATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.226
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAAAGCCCAGCAAGCTG
R:
TGGGCTGTTCTTGAACTGGAC
Band lengths:
357-997
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]