BtaINT0098333 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4836096-4837884:-
Coord C1 exon
chr2:4837657-4837884
Coord A exon
chr2:4836264-4837656
Coord C2 exon
chr2:4836096-4836263
Length
1393 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGTGTGCCTGGGCCGTGCAGGAG
3' ss Score
5.23
Exon sequences
Seq C1 exon
TTCTGGTCCCTGGGCAGTGGGCGTGACCACGTGATGGATGCCTTGGCCCAGTGTGAGCAACTGGCCCGGGAGAGGGGCGAGAGTGAGCGCCAGGCGCCCTGGCGCATCTACTTCCGGAAGGAGTTCTTCACCCCATGGCACGACTCCCAGGAGGACCCGGTCAGCACCCATCTCATTTACCGCCAAGTCCTCCATGGAGTCTGGCTTGGCGAGTACCCCTTCGAGAAG
Seq A exon
GTGAGGGGACCACAGCGCTCAGGGCCCCAAAGACCCCCCTCTCAGACAGCCTGGGGAAGGGCCCTGCTCGAGGGCAGGGACTTTGGGACAGAACAAGGGCAGCTGGGCTGGGCACCAGGCATGTCCCTGGGGAGGCCGTGTGGGTCATGGAGGGCAGGAGGCTGAGGGAGAGGAGTGGGCCCAGGATGTATCTGTGAGTACAGGTCCCTGCAGCCCTCTGGGAGAAGCTGTCCCTGCCCAGTAGCCTCCATCCCCTTCTTTAGCCACAGGTTCACTCAAGCTTCTGGGGTTTGAGCCACCTGCCGCCAGCAGCAAAACCTGTCCCCCCAATCAGCCGCAGGCCCTCCTAGCCTTACCACAGTAGCTGCTCATGGGGCAGCAGGGCCTGGGGGTCAGGAACACGGCCTTGGAGTCCCAGCATTTGAATTCAGGTCCCACCTGTGCCTCTTCCTGGCGGTGTGGCCTTGGAACATTAGGTCACCTCTCTGAGCCCCTGGCTGTCTCCTGGAAGGTGCAGTCACCAGAGCTTTCTGTGTGGTTGTGAGACTCAGGGTAGGGGAGCTCATGCACCTGACCTCCTTGGGCAATGCTGTGCCTGTTCAGCGGGTGCAGACCTCCCTGGGCCTGAATCCAGAGGATGAGCTGGGGACTGGAGGCAACTGTGGCAGTCCTGGAGGCCTGCCTGGAGCAGGGCAGTGGGCAGGGAGAGGTGGGGGCAAAGAGGGTGTGGGGACAGAGGGTAGGCAAATAGATGGCTGGGCAAGGTTTGTCTCCTTGGAAAGAACAGGGCAGCTTGTCCCTGTAGGGCACCTGGAGCAGGGAACCTTCTGTGTGCTGGGCGTGCTAGTGACTTACACAGGCTCCTGCCCACATGAATCCTAGCAGAGGCTCTGCAGGAATGGCTAGGGAGATCACCTTTGCCCAGTGAGGACTGGGGGAGACAGGGTAAAGGCCTTGTCCACAAGTGAAGGACAGAGAAACCTGATGTCCTGCGGTCCATGGGGTCACAAAGAGTCGGACATGACTCAGTGACTGAACAACAGCACTCACCTCACTCAGCAGTGTTGGGGCTCCAGGCCCCAGAGCTCAATCCCACACACTCACTGGCTCACGAGGGCTGAACAAGGAACATGCAGGACACCCGCCTTGTCTTCAGGCTGGGCTGCTGGGACACTCCGGCCTGCCAACAGGAGCGCAGCCCGTGTTGGGCCCAGTCAGGGCACACAGGGGCTCTGCCATGTTGGGGGAGGGGCAGGTCCTGCCTAGCAGAGGCAACTGCTCACCTCAGTTGTGGAGGGTGAGCGCTCAGCAGGGGCAAGGCTTCCTGGGGGGAGAGTGGGCTCGCACATGCCCACCCCACCCTGGCTCCCGTGTGTGTGCCTGGGCCGTGCAG
Seq C2 exon
GAGGAAGAGCTGGTGGAGCTGCTGGCCCAGCACTGCTATGTGCAGCTCGGTGCCTCGGCCGGGAGCCAGGCCATCCGGGAGCTGCTGCCCAGCTGTGTCCCCTCCAAGCTGTACAGGACCAAGACCCCAGAGAAGTGGGCCAGCCTGGTCACCACCACCTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCCCAGTGTGAGCAAC
R:
CTTGGCATAGGTGGTGGTGAC
Band lengths:
355-1748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]