MmuINT0104609 @ mm9
Intron Retention
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32132479-32133862:-
Coord C1 exon
chr18:32133635-32133862
Coord A exon
chr18:32132647-32133634
Coord C2 exon
chr18:32132479-32132646
Length
988 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCGCTGTCCCTGGCACACAGGAG
3' ss Score
5.72
Exon sequences
Seq C1 exon
TTCTGGTCCTTGGGCAGCGGCTGTGACCATTTGATGGATGCTGTGGCCCAGTGTGAGCAACTGGCCCGAGAGAGGGGAGAGAGCCAGCGGCAGGCCCCCTGGCGTATCTACTTCCGGAAGGAGTTCTTCACCCCCTGGCATGACTCCCAGGAGGACCCTGTGAGCACTGAGCTCATTTACCACCAAGTCCTCCGTGGGGTGTGGTCTGGCGAGTATAACTTTGAGAAG
Seq A exon
GTGAGGAGCCCTGCGAGTTGCCCCATTCCTAGACTGTGGCCATCAGGATGCTTTGCAGTATAGGGGCTACGTGGCAATGGAAGTAATAAAGAATGTGGCAGACAGGAGCCTGAGGAAGGATGGATGGAAAGGTAGATACAAGGGTGCAGGCATGGAGCCAACACTGGGCACAGACATCTCTCCCAGGCCTGGCCGCCTTCTTCCTCCTCTGGGTTGCAGGTTTGCTTGGGCATCTGGGATCCTTGGCACCCACAGCATCAGGCAGAAAAGGCCCCCCTACTTGTCCCAGGCTCCCTGACCTCCCACACCAGCTGCTCATAGAGCAGTGTATCCTGGGGATCAGGAATGTAGCCTCGAAGCTGAATGATGATAGCCTGGGTTCGATCCCTCGTACTGTATAAACTGAACCTGGTAGCGAACCCCTGTAATGCCAGCAACTGGGAGGCAAGAAGAGCATAAGTTTAAGGTTATCCTTGGATATATAGGGAGTTTGAGGCCAGTCTGAGATACATGAGGCTTATTCTAGGGGTTGGGGGGAGGGAGAAGGAGGGAAAAGAGGGGAAAGAGGAGGAAGAACATGGAGAAAGAAGAGGGGAGGAGATGAGAAGGGAAGGAAGAAGAGGACCCTCGGGGTCACTCACATCTGGGATGCACAAAGAGCTCTAACAACAGGGTGCTCTGTGACTATGTGGCACCAGGTGCAAACACCACATGCCACATCAGGAGGCTGTGTCTTGGGACCCTAACAGCCACAGCCATTTCAGCCGTCTGCCTGAATGGGGCAGCCACTGTGTTTTTGGCATGGGAGGACTTTGCCCCTCCTAGAGCAGCAGTGTAGGGGAGAGGTTAGGACAGGAGGCTGCTCCTGCCTCCTTCCTTGTGTGAGAGGCTGGTGAGCCCCACTGCTCTGAGGCAGGAGCTGCCTCGTGGGAAGACCTTGTGGGCCCTTACTCACCCCTCTTATGCTCCCGCTGTCCCTGGCACACAG
Seq C2 exon
GAGGAGGAGCTTGTGGAGCTGCTGGCCCGGCACTGCTATGTGCAGCTTGGGGCCACGGTGAAGAGTAACGCTGTCCAGGAGCTGTTGCCCAGCTGTGTTCCCTCCAAACTGTACCGGACCAAGTCTCCAGAGAAGTGGGCTAGCCTTGTCACCGCTGCCCATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-Myo7b:NM_032394:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=PD(47.3=56.6),PF0037313=FERM_M=PU(29.9=38.2)
A:
NA
C2:
PF0037313=FERM_M=FE(56.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGATGGATGCTGTGGCCC
R:
GCTAGCCCACTTCTCTGGAGA
Band lengths:
344-1332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: