RnoINT0097434 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24759365-24760723:-
Coord C1 exon
chr18:24760496-24760723
Coord A exon
chr18:24759533-24760495
Coord C2 exon
chr18:24759365-24759532
Length
963 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTTCTGTCCCTGGAACACAGGAA
3' ss Score
4.78
Exon sequences
Seq C1 exon
TTCTGGTCCTTGGGCAACAGCTGTGACCATGTGATGGATGCTGTGGCCCAGTGTGAGCAACTGGCCTGGGAGAGGGGAGAGAGCCAGCGCCAGGCCCCCTGGCGCATCTACTTCCGGAAGGAGTTCTTCACCCCGTGGCATGACTCCCGAGAGGACCCCGTGAGCACTGAGCTCATTTACCACCAAGTCCTCCGGGGAGTGTGGTCTGGCGAGTATAACTTTGAGAAG
Seq A exon
GTGAGGAGCCCTGAGAGGTGCCCCATCCCTAGACTGTGGGTGTCGGGACGCTTCACAGCACAGGCACCCAGTGGCAATGGAAGTAATAAAGAGCGTAGCAGACGGGAGCCTGAGGAATGATGGATGGAAAGGTAGACACAAGGCTGCAGGAGTAGGGCCCACACAGGGTACAGCCATCCCTCCCAGGCCTGGCCTGGTTCTTCCTCCTGTGGGTTGCAGGTTTTCTTGGGCATCTAGGATCCTTGGCACCCACAGCATCAGGCATGGAAGGCCTCCCTATTTGCCCCAGGATGCCTGATCTCCCACAGCAGTGGCTCATAGAGCAGCACGTCCTGAGGATCAGGAATGTGGCCTCGGAGCTGGACGGAGCCCTGGGCTTGATCCCTGGCACTGTATAAACTGAACGTGGTAGTGAACTGGGAGGCGAGAGGAGCGGAGTTCAAGGTTATCTTTGAACACATAGGGAGTTGGAGGCCAGTCTGAGATACATGAGACTTATTAGGGGTTAGGGGAGAGGGAGGAGGAGGGAAAAGAGGGGGAAGGAGAGGAAGGACATATGAAGGAGAAAGAGGAGGGGAGGAGAGAGAAGAGAAGGAAGAAGAGGACTCGGGTTCATCACATCTGGAATGCATAAAGAACCAAGAGCTCTAACAAGAGCTCTGTGACTATGTGGCAACAGGTCACACCACGTGCCACATCAGGAGGTTGTGTTTTTGGACTCTAGCAGACAGCCATCCCAGTGATCTGCCTAGACAGGACAGCCACTGTGCTCTCTTGGCATGGGAGGGCCATGCCCCTCTTCGAGCAGCAGTGTAGAGGGGAGGTTAGGACAGGAGGCTGCTCCTGCTTCCGACCTTGTGTGAGAGGCTGGGGAGCCCCACTGTGCCGAGGCAGGAGCTGCCCCAGCGGGAGTCTGCAGCCCTTACTCTGCCCTCTCATGTGCCTTCTGTCCCTGGAACACAG
Seq C2 exon
GAAGAGGACCTGGTAGAGCTGCTAGCCCGGCACTGCTATGTGCAGCTTGGGGCCACAGTGAAGAGTAATGCTGTCCAGGAGCTGCTACCCAGCTGTGTTCCTTCCAAGCTGTACCGCACCAAGTCTCCAGAGAAGTGGGCTAGCCTTGTCATCGCTGCCCATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAGCTGTGACCATGTGA
R:
CTTCTCTGGAGACTTGGTGCG
Band lengths:
350-1313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]