DreINT0015004 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28097067-28099447:+
Coord C1 exon
chr6:28097067-28097294
Coord A exon
chr6:28097295-28099279
Coord C2 exon
chr6:28099280-28099447
Length
1985 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCGTTTTGCATGCGTTTCAGGAA
3' ss Score
8.59
Exon sequences
Seq C1 exon
GTTTGGTCTCTTGGTAGTGGCCGTGAGCATGTGATGGATGCCATCTCTCAGTGTGAGCAGGAAGTGAAGAGGAAGGGGGGGCAGGAGCAGCATGCCCCCTGGCGTCTCTACTTCCGTAAAGAGGTCTTCGCGCCTTGGCATGACTGCGGCCAGGACAACGTGAGCACAGACCTGATCTACAGACAGGTTATCAGAGGACTGAAATATGGAGAGTACCAGTGTGAGAAG
Seq A exon
GTGAGTTCAAATGGAAGTTTTTTTTTTCCTTAACTGATGCATAGCTTAGTGATTTGGCTTATAAAATGAGAGAAAAAAACAGCATGATGGGACTTGATGTTGTTCACTGGATATTTATTTTATTGCTATCATTTGCTTTTACTGTAATGTCATGTTAAGTCTACAGGGTATCCGCACGGTCTTAAAAAGTCTTAAATCAACTGAAATGTTGTGTTGTAGGTCTTAAATCTTTTTTTAACAGGTCGTAATTTTCCTTTGTTTATGGTCATTAACACCCATACAATCCATCTCAATAAAACTTTTACGTTTTATTTAAAAATAGCATTTAATTGCTTTCCTTATAGTAACATTTGCTTGAAAGTTCTCCATTTATTAACTGTCAAGAACACTGACCTATATTTTAAATTTTTATTATTTTATTTAAATTTATAAATAATAATTATTATTATTGTTGACTGAAGTAATTGACAGCTATGTTTTGTTCTATTTATTATAAGGGTCATAGGGTTTGTGAATGGATATATTTGAAAATTAATAAAAAAAAACATTCAAAGTAATTAATAATTATTATTATTATTGTATTATTAAATTGATTATATTTTAATCATATAAGATAGGGTGAGTAAAAATCTTTTCTAAAAAAAGAAAAAAAGTCTTCATTATAAGAGTCTGAAATATAACTTGGTAAAACCTGCAGGAACCCTGGTCTAGTTCACGTTACATGACTTTAAACATTGAGAAATTGATGTGCCGTTCAGACCACGGCTTGATTTTTCTGTCAGAGGTATTTCACACTATGCAACACTATATAAATGAGGGGTGTCAAACTCAGTTCCTGGAGAGCTGCAGCTCTGCACAGACTAGGATTAACCCTTATTACAGTTTGTTTTTAAATGGCTATGACAGTTTTTTTTCCCAATGCATTTGACAAGTTTATTAAACTCTTAATGCACCAACTCACCAAAAATGCACAATTGGCAAAACGGTTAACTTCATGCTCAAAATCACACATTGTAAACTAAACCCCAAAACTACTTTTCAAAATACAGTAATAAACTAACACAATACACAATGTCTAACAAAACACTGCAAACATGTTTCAAAATCAAATAATTATTCAAAACACTAACACATGTTCTCTTCCAACAGGAACATTTAGTCAGTCGTAACACTTTGGCAATAAAAACACTATCATCAGCTAAAATTACAGAAGCTGCATTATTTTATGTCAGGTCTGCCCTTATATTTGAAGCCTCTCTACATTTTTGTTTGGTTAGGTTTAGTAAATGCATGCATTTTGTTTCTTTTGCTGCAGAAATTCAATACAAAAATAAATGACCATCTCAGAGTAGCTTTATAAAATTTTCAGTTTATGTTAAAAAAAAAAATACAGACACAGAATTGCTGCAGTACAGGCTTTATTTGCAAAAGGACAATGGCTGCTAGATATACAAACAGAAAAAGCACTACATTTATAAAAAAAAAAATAATAATAATCAATCTTATGCATTTGGCCACATGTTCTCATCCACATCACACCTGATATCTTCTCTGGCAAAGCATCATGAGAAGAATTATCTTGTTGTTCCTTTTAATATAATGTTGCCCTAAAAAGTTCATATACCGCAGGAACAGTATAACAGAAGATTTTAGCAGTTTTAAAACCTTGACTTTTCCTAACTGCTGTAAACTTTGAAATCGGTTATCGTCACAATGCCTATTAGCAAGTTAGATAAGTAAGTTCAAAGGTATTGGTGATAAAAACTTTACCAATGACTTTGATTTATTTATTTATTTTTTTTTTTGTATAAAATTTCAGTGTGTTCATTTTTTTTAATTATATCACAGAATATAAAATATCTTTTAAACTTTTTGACTAATAGTGTCTGATTAAAATGGGATATTGGGGTACAGTTTTTGCTGATTGTTATGTGAATCTCGATGTTGACTGTCATTCATTCTATGGCGTTTTGCATGCGTTTCAG
Seq C2 exon
GAAGAAGACTATGTTGGGCTTGCAGCAAAGCACTTCTATGTCCAGCATGGATCAGACACCAGTATGGAGAACACTAAGACTGTAGTTAGGGAATGCATTAACTCCAAACTACTGGAGGCCAAATCAGAAGACAAGTGGGCCCAGATGGTCAACACAGCACACGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PU(6.1=38.2)
A:
NA
C2:
PF0037313=FERM_M=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCATGTGATGGATGCCA
R:
CATCTGGGCCCACTTGTCTTC
Band lengths:
353-2338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]