HsaINT0108909 @ hg19
Intron Retention
Gene
ENSG00000137474 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:7606]
Coordinates
chr11:76903096-76905569:+
Coord C1 exon
chr11:76903096-76903323
Coord A exon
chr11:76903324-76905398
Coord C2 exon
chr11:76905399-76905569
Length
2075 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CGAGGCCTCCCCCCACCTAGGAG
3' ss Score
5.93
Exon sequences
Seq C1 exon
GTGTCCTCCCTGGGCAGCGGCAGTGACCACGTCATGGACGCCATCTCCCAGTGCGAGCAGTACGCCAAGGAGCAGGGCGCCCAGGAGCGCAACGCCCCCTGGAGGCTCTTCTTCCGCAAAGAGGTCTTCACGCCCTGGCACAGCCCCTCCGAGGACAACGTGGCCACCAACCTCATCTACCAGCAGGTGGTGCGAGGAGTCAAGTTTGGGGAGTACAGGTGTGAGAAG
Seq A exon
GTGAGTGGGAGGGAATCTTCCGCCAGGCTGGCTTGGCTCACAGCCTCCTGCTTTCCACGTTTGGGCTGAGTGCTCCTCTGTGAGCCATCATTAGCTCAGGCTGGGGTGAGCCTGACTGCAACCAGGCACTCTTCAGGCTCCTGGATGGACACCGCCTACTTCAGGGGGCTCGTGAGGAGAGGCGAGATGGCGGGAGCAAGGGCTTCTGAGGATGTCCTGAATTCCACCAGTGGAGGAGGCCCCCACACTGCTGTAGTGACTGTGCGTGCTACAGAGGACGTGCCGCAGGACCTGCTGCACCATTCTGAGTATATCTAGTAAGCGCTGCATTAAATGAGAAATACAGCCATTCCTTGAGATCAGAATTTGCAAATGTGTATTCTTTTTTCTCCTTCTGAGGACAGGAGTTATGTGGTTGTTTTGTTTTCGATAATGGTAATGGTAGCTATGGTTCTGTTGGTGATTGTGATGGAGGGATGAGAAAGGAGGTGGTGGAAATGAAGAGGATAGTTGGTGGTAGTAACGTTGGTGGAGGTAGTGATGATGGTTGGTGGTGATGGTGGAGGTAGTGATGGTGTTGGTAATGATGATGGTGGTGATGGTGGAGGAGGTAGTGATGGTGTTGGTGATGGTGGAGGGTAGTGATGGTGTTGTTTGTGATGGTGGAGGTAGTGATGGTGTTGGTGATGGTGGAGGTAGTTGTGATGGTGGAGGTAGTGATGCTGTTGGTGATGGTGGAGGTAGCGATGGTGTTGTTGGTGATGGTGGAGGTGGTGATGGTGTTGGTGATGGTGGAGGTAGTTGTTTGTGATGGTGGAGGTAGTGATGCTGTTGGTGATGGTGGAGGTAGCGATGCTGTTGGTGATCGTGGAGGTAGCGATGGTGTTGGTGATGGTGGAGGTAGTGATGTTAGTGATGAGGTATTGTTGGTACTGATGACTATGGTAATATTGGAGGTAGGGATGATGTTAGTGATGGTGGTGGTGGTGGTGATGGTGGAGGTAGTGATGGTGTTGGTGGTGATGACAGTGTTGTGGGTAGTGATGATAGTGGTGATGGTAAAGGTAGTGATGGTGGTGTTGACAATGACAGTGTTGTTGGTAATGATGGTGATGGTGGAGGCAGTGATGGTGTTGGTGATGACAGTGTTGTTGGTAGTGATAATGATGGTGATGGTGGAGGCATAGTGTTGGTAGTGATGATGGTGGTGATGGTGGAGGCAGTAATGATGTTGGTGATAGTGTTGGCAGTGATGGTGGTGATGGTGGAGGTAGTGGTGGTAGTTTTGTTGGTGATAGTGGTGATGATAATGGTGGTATTGGTGGTAAGCAAATATTCAGGCGGAGTGCATTAGTATAGCCACATCAGTTGCTAAAATTCTGAAATATTTCAAACTGGTTGGAAAATATCTATTGCCTCCAAGGCCCCCAAGAGCCTTTCTCTATGCCCTTGCTGCTGGAGCCCTGGGGAGCTCTAGGTAGGCATCACTGGGGCTGCTGTGCACCAGGCCAGGCAGAGAAGGGGCAAATGCCCAGTGGCCACTTGGCTCTCTGAACCCTCTGCAGTAGATCCTGCCAGCTGTTAACCACTTTAACTGTCCCCCAAGTGCTTAACGGTGGTAATGGTGATGGAGGCAGTCACAGTGATGCACTTCCCTCACTCTGACCCTGCCAGCAGACCCTAGGTGTCTCCCATTCTCCAGGGCAGACACTTCCTCTTCTGCTGTTTGTCAGCTCTGGTCGCTGTCTCACAGGGCTGAGTGTGCAGTGGCTGCTCGATGGGCTGGCTTGTTTCTTTGCATCACTTCATGTGCCCCTGGGCAGAGTCCAGCTCCATGCCAGTGCCAGAGGGATCCAGGAGAAGGTGAGGGTGTGGCCCTGCCCTTGGGGAGCTCATGGTTCCTCTGAGCAGACAAGAATTCCCTGGTGAATCAGTGAGAAGCCTGGGTCCCAAAGGCCAGGCTCTGAGAGCTACAGGAGGCAGGGCCAGGAGAGGGGCCTGGAGCCTTTGGTGGTGTGGAAGGGCTTCCTGGAGGGGCCTGGGCCAATGCATGACCGAGGCCTCCCCCCACCTAG
Seq C2 exon
GAGGACGACCTGGCTGAGCTGGCCTCCCAGCAGTACTTTGTAGACTATGGCTCTGAGATGATCCTGGAGCGCCTCCTGAACCTCGTGCCCACCTACATCCCCGACCGCGAGATCACGCCCCTGAAGACGCTGGAGAAGTGGGCCCAGCTGGCCATCGCCGCCCACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137474-MYO7A:NM_000260:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=PD(47.3=56.6),PF0037313=FERM_M=PU(33.3=38.2)
A:
NA
C2:
PF0037313=FERM_M=FE(64.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)