GgaINT0104535 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198117195-198118267:-
Coord C1 exon
chr1:198118040-198118267
Coord A exon
chr1:198117366-198118039
Coord C2 exon
chr1:198117195-198117365
Length
674 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
ATCATGTTTGGATCTCACAGGAG
3' ss Score
6.2
Exon sequences
Seq C1 exon
GTTTCTTCCCTGGGGAGTGGCAATGACCATGTGATGGATGCTGTGTCCCAGTGTGAGCAGTATGCCAAGGAGCAAGGAGCACAGGAGCGCAACGCGCCGTGGCGGCTCTTCTTCAGGAAGGAGATCTTCACTCCTTGGCACAATCCAAGTGAGGACAATGTGGCCACCAATCTGATTTACCAACAGATTGTCCGAGGGGTGAAATTTGGGGAGTACCGGTGTGACAAG
Seq A exon
GCAAGTGTCCTCCACAGCTACTGATCTGGTCAACATACATCCTTAATATGGTGAAATGCACTTCACAAAATGGAATAAGAAATCTTCCTCCCTGGGTACCTGTTGGTTATTAGGGTATATACTTAGGAAACAGAGGCTACAAGAATCAGATCCTTTTGGCTGGAGAAGGATCAGACTCTCCCATGGGTTGTGTGAGCACTGTAGACTTTTGGATGAGAGAGTGAATGTCACCTCATCCATCACCCCCAGTTTGGAGGGCTACAGGATAACCAGTCCACAAGGTCAGATTCCTGTTTGGTGAATCCTGCTAAGCTTTAGGCACAAGACAGACAATTTGGGCTACATACAGCTGTACTATGTAATACAAACCCAGTGCTGAAGGGATGTTGGAAGCACAAACCCATGTGTCTAGAGTCTCTGTGAGCTTACAGAATTATTCCAGTGTCACTGACATGAGCATCTCAAAAGACATTAAAATCTCTGAAAATGTCCATTGCATTTTGTCTTGCTTCTGTTTAAAATTATCCAGGTGTCAAACTGAAGATATTCTTCTTTCTTAGCACCTACTTGTTCTCCTTTGAACCAGTAAAGACCAGGCACTATAGGAACTAAACCATCTTTTCCCATCTTTATTACATTAACATCAGCTCTTTTATCATGTTTGGATCTCACAG
Seq C2 exon
GAGGAAGACCTGGCAGAACTGGCTTCCCAGCAGTACTATGTGGACTATGGGTCAGAAATGGTACTGGAAAGGCTGCTAAATCTAATTCCATCCTACATCCCGGACAGAGAGATCACTGCATCTAAAACAGTGGAGAAATGGGCTCAGCTCATTATAGCTGCACATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=PD(47.3=56.6),PF0037313=FERM_M=PU(29.6=38.2)
A:
NA
C2:
PF0037313=FERM_M=FE(57.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGATGCTGTGTCCCAGTG
R:
GAGCTGAGCCCATTTCTCCAC
Band lengths:
346-1020
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]